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Pathway Human Homo sapiens

SUMOylation of transcription cofactors

R-HSA-3899300 in Reactome release 97: under SUMO E3 ligases SUMOylate target proteins, with 45 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3899300 (mouse), R-RNO-3899300 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 45 genes in this human pathway; showing 1 to 45, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneBMI1AuthorityHGNC:1066Mapping file id648 NCBI fileEvidenceTAS
GeneCASP8AP2AuthorityHGNC:1510Mapping file id9994 NCBI fileEvidenceTAS
GeneCBX2AuthorityHGNC:1552Mapping file id84733 NCBI fileEvidenceTAS
GeneCBX4AuthorityHGNC:1554Mapping file id8535 NCBI fileEvidenceTAS
GeneCBX8AuthorityHGNC:15962Mapping file id57332 NCBI fileEvidenceTAS
GeneCOMMD3-BMI1AuthorityHGNC:48326Mapping file id100532731 NCBI fileEvidenceTAS
GeneCREBBPAuthorityHGNC:2348Mapping file id1387 NCBI fileEvidenceIEA
GeneCTBP1AuthorityHGNC:2494Mapping file id1487 NCBI fileEvidenceTAS
GeneDAXXAuthorityHGNC:2681Mapping file id1616 NCBI fileEvidenceTAS
GeneDDX17AuthorityHGNC:2740Mapping file id10521 NCBI fileEvidenceTAS
GeneDDX5AuthorityHGNC:2746Mapping file id1655 NCBI fileEvidenceTAS
GeneEP300AuthorityHGNC:3373Mapping file id2033 NCBI fileEvidenceTAS
GeneHIPK2AuthorityHGNC:14402Mapping file id28996 NCBI fileEvidenceTAS
GeneING2AuthorityHGNC:6063Mapping file id3622 NCBI fileEvidenceTAS
GeneMBD1AuthorityHGNC:6916Mapping file id4152 NCBI fileEvidenceTAS
GeneMRTFAAuthorityHGNC:14334Mapping file id57591 NCBI fileEvidenceTAS
GeneNCOA1AuthorityHGNC:7668Mapping file id8648 NCBI fileEvidenceTAS
GeneNCOA2AuthorityHGNC:7669Mapping file id10499 NCBI fileEvidenceIEA
GeneNCOR2AuthorityHGNC:7673Mapping file id9612 NCBI fileEvidenceIEA
GeneNPM1AuthorityHGNC:7910Mapping file id4869 NCBI fileEvidenceTAS
GeneNRIP1AuthorityHGNC:8001Mapping file id8204 NCBI fileEvidenceTAS
GenePARK7AuthorityHGNC:16369Mapping file id11315 NCBI fileEvidenceTAS
GenePCGF2AuthorityHGNC:12929Mapping file id7703 NCBI fileEvidenceTAS
GenePHC1AuthorityHGNC:3182Mapping file id1911 NCBI fileEvidenceTAS
GenePHC2AuthorityHGNC:3183Mapping file id1912 NCBI fileEvidenceTAS
GenePHC3AuthorityHGNC:15682Mapping file id80012 NCBI fileEvidenceTAS
GenePIAS1AuthorityHGNC:2752Mapping file id8554 NCBI fileEvidenceTAS
GenePIAS2AuthorityHGNC:17311Mapping file id9063 NCBI fileEvidenceTAS
GenePIAS3AuthorityHGNC:16861Mapping file id10401 NCBI fileEvidenceTAS
GenePIAS4AuthorityHGNC:17002Mapping file id51588 NCBI fileEvidenceTAS
GenePPARGC1AAuthorityHGNC:9237Mapping file id10891 NCBI fileEvidenceIEA
GeneRING1AuthorityHGNC:10018Mapping file id6015 NCBI fileEvidenceTAS
GeneRNF2AuthorityHGNC:10061Mapping file id6045 NCBI fileEvidenceTAS
GeneSAFBAuthorityHGNC:10520Mapping file id6294 NCBI fileEvidenceTAS
GeneSCMH1AuthorityHGNC:19003Mapping file id22955 NCBI fileEvidenceTAS
GeneSIN3AAuthorityHGNC:19353Mapping file id25942 NCBI fileEvidenceTAS
GeneSUMO1AuthorityHGNC:12502Mapping file id7341 NCBI fileEvidenceIEA, TAS
GeneSUMO2AuthorityHGNC:11125Mapping file id6613 NCBI fileEvidenceTAS
GeneSUMO3AuthorityHGNC:11124Mapping file id6612 NCBI fileEvidenceTAS
GeneTOPORSAuthorityHGNC:21653Mapping file id10210 NCBI fileEvidenceTAS
GeneTRIM28AuthorityHGNC:16384Mapping file id10155 NCBI fileEvidenceTAS
GeneUBE2IAuthorityHGNC:12485Mapping file id7329 NCBI fileEvidenceIEA, TAS
GeneUHRF2AuthorityHGNC:12557Mapping file id115426 NCBI fileEvidenceTAS
GeneZBTB35AuthorityHGNC:12915Mapping file id7690 NCBI fileEvidenceTAS
GeneZNF350AuthorityHGNC:16656Mapping file id59348 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.