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Pathway Human Homo sapiens

Co-inhibition by PD-1

R-HSA-389948 in Reactome release 97: under Regulation of T cell activation by CD28 family, with 224 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-389948 (mouse), R-RNO-389948 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 224 genes in this human pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 3
GeneADRM1AuthorityHGNC:15759Mapping file id11047 NCBI fileEvidenceTAS
GeneAGO1AuthorityHGNC:3262Mapping file id26523 NCBI fileEvidenceTAS
GeneAGO2AuthorityHGNC:3263Mapping file id27161 NCBI fileEvidenceTAS
GeneAGO3AuthorityHGNC:18421Mapping file id192669 NCBI fileEvidenceTAS
GeneAGO4AuthorityHGNC:18424Mapping file id192670 NCBI fileEvidenceTAS
GeneASH2LAuthorityHGNC:744Mapping file id9070 NCBI fileEvidenceTAS
GeneATF3AuthorityHGNC:785Mapping file id467 NCBI fileEvidenceTAS
GeneB3GNT3AuthorityHGNC:13528Mapping file id10331 NCBI fileEvidenceTAS
GeneBRD4AuthorityHGNC:13575Mapping file id23476 NCBI fileEvidenceTAS
GeneBTRCAuthorityHGNC:1144Mapping file id8945 NCBI fileEvidenceTAS
GeneCCND1AuthorityHGNC:1582Mapping file id595 NCBI fileEvidenceTAS
GeneCD247AuthorityHGNC:1677Mapping file id919 NCBI fileEvidenceTAS
GeneCD274AuthorityHGNC:17635Mapping file id29126 NCBI fileEvidenceTAS
GeneCD3DAuthorityHGNC:1673Mapping file id915 NCBI fileEvidenceTAS
GeneCD3EAuthorityHGNC:1674Mapping file id916 NCBI fileEvidenceTAS
GeneCD3GAuthorityHGNC:1675Mapping file id917 NCBI fileEvidenceTAS
GeneCD4AuthorityHGNC:1678Mapping file id920 NCBI fileEvidenceTAS
GeneCDK4AuthorityHGNC:1773Mapping file id1019 NCBI fileEvidenceTAS
GeneCOPS5AuthorityHGNC:2240Mapping file id10987 NCBI fileEvidenceTAS
GeneCREBBPAuthorityHGNC:2348Mapping file id1387 NCBI fileEvidenceTAS
GeneCSKAuthorityHGNC:2444Mapping file id1445 NCBI fileEvidenceTAS
GeneCSNK2A1AuthorityHGNC:2457Mapping file id1457 NCBI fileEvidenceTAS
GeneCSNK2A2AuthorityHGNC:2459Mapping file id1459 NCBI fileEvidenceTAS
GeneCSNK2BAuthorityHGNC:2460Mapping file id1460 NCBI fileEvidenceTAS
GeneCTNNB1AuthorityHGNC:2514Mapping file id1499 NCBI fileEvidenceTAS
GeneCUL1AuthorityHGNC:2551Mapping file id8454 NCBI fileEvidenceTAS
GeneCUL3AuthorityHGNC:2553Mapping file id8452 NCBI fileEvidenceTAS
GeneDAD1AuthorityHGNC:2664Mapping file id1603 NCBI fileEvidenceTAS
GeneDDOSTAuthorityHGNC:2728Mapping file id1650 NCBI fileEvidenceTAS
GeneDERL1AuthorityHGNC:28454Mapping file id79139 NCBI fileEvidenceTAS
GeneDERL2AuthorityHGNC:17943Mapping file id51009 NCBI fileEvidenceTAS
GeneDERL3AuthorityHGNC:14236Mapping file id91319 NCBI fileEvidenceTAS
GeneDPY30AuthorityHGNC:24590Mapping file id84661 NCBI fileEvidenceTAS
GeneEEDAuthorityHGNC:3188Mapping file id8726 NCBI fileEvidenceTAS
GeneEP300AuthorityHGNC:3373Mapping file id2033 NCBI fileEvidenceTAS
GeneEPAS1AuthorityHGNC:3374Mapping file id2034 NCBI fileEvidenceTAS
GeneERLEC1AuthorityHGNC:25222Mapping file id27248 NCBI fileEvidenceTAS
GeneERLIN1AuthorityHGNC:16947Mapping file id10613 NCBI fileEvidenceTAS
GeneERLIN2AuthorityHGNC:1356Mapping file id11160 NCBI fileEvidenceTAS
GeneEZH2AuthorityHGNC:3527Mapping file id2146 NCBI fileEvidenceTAS
GeneFOSAuthorityHGNC:3796Mapping file id2353 NCBI fileEvidenceTAS
GeneFOSBAuthorityHGNC:3797Mapping file id2354 NCBI fileEvidenceTAS
GeneGSK3BAuthorityHGNC:4617Mapping file id2932 NCBI fileEvidenceTAS
GeneH2AB1AuthorityHGNC:22516Mapping file id474382 NCBI fileEvidenceTAS
GeneH2AC14AuthorityHGNC:4727Mapping file id8331 NCBI fileEvidenceTAS
GeneH2AC18AuthorityHGNC:4736Mapping file id8337 NCBI fileEvidenceTAS
GeneH2AC19AuthorityHGNC:29668Mapping file id723790 NCBI fileEvidenceTAS
GeneH2AC20AuthorityHGNC:4738Mapping file id8338 NCBI fileEvidenceTAS
GeneH2AC4AuthorityHGNC:4734Mapping file id8335 NCBI fileEvidenceTAS
GeneH2AC6AuthorityHGNC:4733Mapping file id8334 NCBI fileEvidenceTAS
GeneH2AC7AuthorityHGNC:4729Mapping file id3013 NCBI fileEvidenceTAS
GeneH2AC8AuthorityHGNC:4724Mapping file id3012 NCBI fileEvidenceTAS
GeneH2AJAuthorityHGNC:14456Mapping file id55766 NCBI fileEvidenceTAS
GeneH2AXAuthorityHGNC:4739Mapping file id3014 NCBI fileEvidenceTAS
GeneH2AZ2AuthorityHGNC:20664Mapping file id94239 NCBI fileEvidenceTAS
GeneH2BC1AuthorityHGNC:18730Mapping file id255626 NCBI fileEvidenceTAS
GeneH2BC10AuthorityHGNC:4756Mapping file id8346 NCBI fileEvidenceTAS
GeneH2BC11AuthorityHGNC:4761Mapping file id8970 NCBI fileEvidenceTAS
GeneH2BC12AuthorityHGNC:13954Mapping file id85236 NCBI fileEvidenceTAS
GeneH2BC12LAuthorityHGNC:4762Mapping file id54145 NCBI fileEvidenceTAS
GeneH2BC13AuthorityHGNC:4748Mapping file id8340 NCBI fileEvidenceTAS
GeneH2BC14AuthorityHGNC:4750Mapping file id8342 NCBI fileEvidenceTAS
GeneH2BC15AuthorityHGNC:4749Mapping file id8341 NCBI fileEvidenceTAS
GeneH2BC17AuthorityHGNC:4758Mapping file id8348 NCBI fileEvidenceTAS
GeneH2BC21AuthorityHGNC:4760Mapping file id8349 NCBI fileEvidenceTAS
GeneH2BC26AuthorityHGNC:20514Mapping file id128312 NCBI fileEvidenceTAS
GeneH2BC3AuthorityHGNC:4751Mapping file id3018 NCBI fileEvidenceTAS
GeneH2BC4AuthorityHGNC:4757Mapping file id8347 NCBI fileEvidenceTAS
GeneH2BC5AuthorityHGNC:4747Mapping file id3017 NCBI fileEvidenceTAS
GeneH2BC6AuthorityHGNC:4753Mapping file id8344 NCBI fileEvidenceTAS
GeneH2BC7AuthorityHGNC:4752Mapping file id8343 NCBI fileEvidenceTAS
GeneH2BC8AuthorityHGNC:4746Mapping file id8339 NCBI fileEvidenceTAS
GeneH2BC9AuthorityHGNC:4755Mapping file id8345 NCBI fileEvidenceTAS
GeneH3-3AAuthorityHGNC:4764Mapping file id3020 NCBI fileEvidenceTAS
GeneH3-3BAuthorityHGNC:4765Mapping file id3021 NCBI fileEvidenceTAS
GeneH3C1AuthorityHGNC:4766Mapping file id8350 NCBI fileEvidenceTAS
GeneH3C10AuthorityHGNC:4775Mapping file id8357 NCBI fileEvidenceTAS
GeneH3C11AuthorityHGNC:4771Mapping file id8354 NCBI fileEvidenceTAS
GeneH3C12AuthorityHGNC:4774Mapping file id8356 NCBI fileEvidenceTAS
GeneH3C13AuthorityHGNC:25311Mapping file id653604 NCBI fileEvidenceTAS
GeneH3C14AuthorityHGNC:20503Mapping file id126961 NCBI fileEvidenceTAS
GeneH3C15AuthorityHGNC:20505Mapping file id333932 NCBI fileEvidenceTAS
GeneH3C2AuthorityHGNC:4776Mapping file id8358 NCBI fileEvidenceTAS
GeneH3C3AuthorityHGNC:4768Mapping file id8352 NCBI fileEvidenceTAS
GeneH3C4AuthorityHGNC:4767Mapping file id8351 NCBI fileEvidenceTAS
GeneH3C6AuthorityHGNC:4769Mapping file id8353 NCBI fileEvidenceTAS
GeneH3C7AuthorityHGNC:4773Mapping file id8968 NCBI fileEvidenceTAS
GeneH3C8AuthorityHGNC:4772Mapping file id8355 NCBI fileEvidenceTAS
GeneH4C1AuthorityHGNC:4781Mapping file id8359 NCBI fileEvidenceTAS
GeneH4C11AuthorityHGNC:4785Mapping file id8363 NCBI fileEvidenceTAS
GeneH4C12AuthorityHGNC:4784Mapping file id8362 NCBI fileEvidenceTAS
GeneH4C13AuthorityHGNC:4791Mapping file id8368 NCBI fileEvidenceTAS
GeneH4C14AuthorityHGNC:4794Mapping file id8370 NCBI fileEvidenceTAS
GeneH4C15AuthorityHGNC:29607Mapping file id554313 NCBI fileEvidenceTAS
GeneH4C16AuthorityHGNC:20510Mapping file id121504 NCBI fileEvidenceTAS
GeneH4C2AuthorityHGNC:4789Mapping file id8366 NCBI fileEvidenceTAS
GeneH4C3AuthorityHGNC:4787Mapping file id8364 NCBI fileEvidenceTAS
GeneH4C4AuthorityHGNC:4782Mapping file id8360 NCBI fileEvidenceTAS
GeneH4C5AuthorityHGNC:4790Mapping file id8367 NCBI fileEvidenceTAS
GeneH4C6AuthorityHGNC:4783Mapping file id8361 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.