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Pathway Human Homo sapiens

Trafficking of AMPA receptors

R-HSA-399719 in Reactome release 97: under Glutamate binding, activation of AMPA receptors and synaptic plasticity, with 31 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-399719 (mouse), R-RNO-399719 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 31 genes in this human pathway; showing 1 to 31, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneAKAP5AuthorityHGNC:375Mapping file id9495 NCBI fileEvidenceTAS
GeneAP2A1AuthorityHGNC:561Mapping file id160 NCBI fileEvidenceTAS
GeneAP2A2AuthorityHGNC:562Mapping file id161 NCBI fileEvidenceTAS
GeneAP2B1AuthorityHGNC:563Mapping file id163 NCBI fileEvidenceTAS
GeneAP2M1AuthorityHGNC:564Mapping file id1173 NCBI fileEvidenceTAS
GeneAP2S1AuthorityHGNC:565Mapping file id1175 NCBI fileEvidenceTAS
GeneCACNG2AuthorityHGNC:1406Mapping file id10369 NCBI fileEvidenceTAS
GeneCACNG3AuthorityHGNC:1407Mapping file id10368 NCBI fileEvidenceTAS
GeneCACNG4AuthorityHGNC:1408Mapping file id27092 NCBI fileEvidenceTAS
GeneCACNG8AuthorityHGNC:13628Mapping file id59283 NCBI fileEvidenceTAS
GeneCAMK2AAuthorityHGNC:1460Mapping file id815 NCBI fileEvidenceTAS
GeneCAMK2BAuthorityHGNC:1461Mapping file id816 NCBI fileEvidenceTAS
GeneCAMK2DAuthorityHGNC:1462Mapping file id817 NCBI fileEvidenceTAS
GeneCAMK2GAuthorityHGNC:1463Mapping file id818 NCBI fileEvidenceTAS
GeneDLG1AuthorityHGNC:2900Mapping file id1739 NCBI fileEvidenceTAS
GeneDLG4AuthorityHGNC:2903Mapping file id1742 NCBI fileEvidenceTAS
GeneEPB41L1AuthorityHGNC:3378Mapping file id2036 NCBI fileEvidenceTAS
GeneGRIA1AuthorityHGNC:4571Mapping file id2890 NCBI fileEvidenceTAS
GeneGRIA2AuthorityHGNC:4572Mapping file id2891 NCBI fileEvidenceTAS
GeneGRIA3AuthorityHGNC:4573Mapping file id2892 NCBI fileEvidenceTAS
GeneGRIA4AuthorityHGNC:4574Mapping file id2893 NCBI fileEvidenceTAS
GeneGRIP1AuthorityHGNC:18708Mapping file id23426 NCBI fileEvidenceTAS
GeneGRIP2AuthorityHGNC:23841Mapping file id80852 NCBI fileEvidenceTAS
GeneMDM2AuthorityHGNC:6973Mapping file id4193 NCBI fileEvidenceTAS
GeneMYO6AuthorityHGNC:7605Mapping file id4646 NCBI fileEvidenceTAS
GeneNSFAuthorityHGNC:8016Mapping file id4905 NCBI fileEvidenceTAS
GenePICK1AuthorityHGNC:9394Mapping file id9463 NCBI fileEvidenceTAS
GenePRKCAAuthorityHGNC:9393Mapping file id5578 NCBI fileEvidenceTAS
GenePRKCBAuthorityHGNC:9395Mapping file id5579 NCBI fileEvidenceTAS
GenePRKCGAuthorityHGNC:9402Mapping file id5582 NCBI fileEvidenceTAS
GeneTSPAN7AuthorityHGNC:11854Mapping file id7102 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.