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Pathway Human Homo sapiens

RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known

R-HSA-8939243 in Reactome release 97: under Transcriptional regulation by RUNX1, with 38 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-8939243 (mouse), R-RNO-8939243 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 38 genes in this human pathway; showing 1 to 38, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneACTL6AAuthorityHGNC:24124Mapping file id86 NCBI fileEvidenceTAS
GeneACTL6BAuthorityHGNC:160Mapping file id51412 NCBI fileEvidenceTAS
GeneARID1AAuthorityHGNC:11110Mapping file id8289 NCBI fileEvidenceTAS
GeneARID1BAuthorityHGNC:18040Mapping file id57492 NCBI fileEvidenceTAS
GeneARID2AuthorityHGNC:18037Mapping file id196528 NCBI fileEvidenceTAS
GeneAUTS2AuthorityHGNC:14262Mapping file id26053 NCBI fileEvidenceTAS
GeneBMI1AuthorityHGNC:1066Mapping file id648 NCBI fileEvidenceTAS
GeneCBFBAuthorityHGNC:1539Mapping file id865 NCBI fileEvidenceTAS
GeneCBX2AuthorityHGNC:1552Mapping file id84733 NCBI fileEvidenceTAS
GeneCBX4AuthorityHGNC:1554Mapping file id8535 NCBI fileEvidenceTAS
GeneCBX6AuthorityHGNC:1556Mapping file id23466 NCBI fileEvidenceTAS
GeneCBX8AuthorityHGNC:15962Mapping file id57332 NCBI fileEvidenceTAS
GeneCOMMD3-BMI1AuthorityHGNC:48326Mapping file id100532731 NCBI fileEvidenceTAS
GeneCSNK2A1AuthorityHGNC:2457Mapping file id1457 NCBI fileEvidenceTAS
GeneCSNK2A2AuthorityHGNC:2459Mapping file id1459 NCBI fileEvidenceTAS
GeneCSNK2BAuthorityHGNC:2460Mapping file id1460 NCBI fileEvidenceTAS
GeneEP300AuthorityHGNC:3373Mapping file id2033 NCBI fileEvidenceTAS
GeneHIPK2AuthorityHGNC:14402Mapping file id28996 NCBI fileEvidenceTAS
GenePBRM1AuthorityHGNC:30064Mapping file id55193 NCBI fileEvidenceTAS
GenePCGF5AuthorityHGNC:28264Mapping file id84333 NCBI fileEvidenceTAS
GenePHC1AuthorityHGNC:3182Mapping file id1911 NCBI fileEvidenceTAS
GenePHC2AuthorityHGNC:3183Mapping file id1912 NCBI fileEvidenceTAS
GenePHC3AuthorityHGNC:15682Mapping file id80012 NCBI fileEvidenceTAS
GeneRING1AuthorityHGNC:10018Mapping file id6015 NCBI fileEvidenceTAS
GeneRNF2AuthorityHGNC:10061Mapping file id6045 NCBI fileEvidenceTAS
GeneRUNX1AuthorityHGNC:10471Mapping file id861 NCBI fileEvidenceTAS
GeneRYBPAuthorityHGNC:10480Mapping file id23429 NCBI fileEvidenceTAS
GeneSCMH1AuthorityHGNC:19003Mapping file id22955 NCBI fileEvidenceTAS
GeneSMARCA2AuthorityHGNC:11098Mapping file id6595 NCBI fileEvidenceTAS
GeneSMARCA4AuthorityHGNC:11100Mapping file id6597 NCBI fileEvidenceTAS
GeneSMARCB1AuthorityHGNC:11103Mapping file id6598 NCBI fileEvidenceTAS
GeneSMARCC1AuthorityHGNC:11104Mapping file id6599 NCBI fileEvidenceTAS
GeneSMARCC2AuthorityHGNC:11105Mapping file id6601 NCBI fileEvidenceTAS
GeneSMARCD1AuthorityHGNC:11106Mapping file id6602 NCBI fileEvidenceTAS
GeneSMARCD2AuthorityHGNC:11107Mapping file id6603 NCBI fileEvidenceTAS
GeneSMARCD3AuthorityHGNC:11108Mapping file id6604 NCBI fileEvidenceTAS
GeneSMARCE1AuthorityHGNC:11109Mapping file id6605 NCBI fileEvidenceTAS
GeneYAF2AuthorityHGNC:17363Mapping file id10138 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.