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Pathway Human Homo sapiens

Negative regulators of DDX58/IFIH1 signaling

R-HSA-936440 in Reactome release 97: under DDX58/IFIH1-mediated induction of interferon-alpha/beta, with 35 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-936440 (mouse), R-RNO-936440 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 35 genes in this human pathway; showing 1 to 35, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneATG12AuthorityHGNC:588Mapping file id9140 NCBI fileEvidenceIEA
GeneATG5AuthorityHGNC:589Mapping file id9474 NCBI fileEvidenceIEA
GeneCYLDAuthorityHGNC:2584Mapping file id1540 NCBI fileEvidenceTAS
GeneHERC5AuthorityHGNC:24368Mapping file id51191 NCBI fileEvidenceTAS
GeneIFIH1AuthorityHGNC:18873Mapping file id64135 NCBI fileEvidenceIEA, TAS
GeneIKBKEAuthorityHGNC:14552Mapping file id9641 NCBI fileEvidenceTAS
GeneIRF3AuthorityHGNC:6118Mapping file id3661 NCBI fileEvidenceTAS
GeneISG15AuthorityHGNC:4053Mapping file id9636 NCBI fileEvidenceTAS
GeneITCHAuthorityHGNC:13890Mapping file id83737 NCBI fileEvidenceTAS
GeneMAVSAuthorityHGNC:29233Mapping file id57506 NCBI fileEvidenceIEA, TAS
GeneNLRC5AuthorityHGNC:29933Mapping file id84166 NCBI fileEvidenceTAS
GeneNLRX1AuthorityHGNC:29890Mapping file id79671 NCBI fileEvidenceTAS
GeneOTUD5AuthorityHGNC:25402Mapping file id55593 NCBI fileEvidenceTAS
GenePCBP2AuthorityHGNC:8648Mapping file id5094 NCBI fileEvidenceTAS
GenePIN1AuthorityHGNC:8988Mapping file id5300 NCBI fileEvidenceTAS
GeneRIGIAuthorityHGNC:19102Mapping file id23586 NCBI fileEvidenceIEA, TAS
GeneRNF125AuthorityHGNC:21150Mapping file id54941 NCBI fileEvidenceIEA
GeneRNF135AuthorityHGNC:21158Mapping file id84282 NCBI fileEvidenceIEA, TAS
GeneRNF216AuthorityHGNC:21698Mapping file id54476 NCBI fileEvidenceTAS
GeneRPS27AAuthorityHGNC:10417Mapping file id6233 NCBI fileEvidenceTAS
GeneTAX1BP1AuthorityHGNC:11575Mapping file id8887 NCBI fileEvidenceTAS
GeneTBK1AuthorityHGNC:11584Mapping file id29110 NCBI fileEvidenceTAS
GeneTNFAIP3AuthorityHGNC:11896Mapping file id7128 NCBI fileEvidenceTAS
GeneTRAF3AuthorityHGNC:12033Mapping file id7187 NCBI fileEvidenceTAS
GeneTRIM25AuthorityHGNC:12932Mapping file id7706 NCBI fileEvidenceIEA, TAS
GeneTRIM4AuthorityHGNC:16275Mapping file id89122 NCBI fileEvidenceIEA, TAS
GeneUBA52AuthorityHGNC:12458Mapping file id7311 NCBI fileEvidenceTAS
GeneUBA7AuthorityHGNC:12471Mapping file id7318 NCBI fileEvidenceTAS
GeneUBBAuthorityHGNC:12463Mapping file id7314 NCBI fileEvidenceTAS
GeneUBCAuthorityHGNC:12468Mapping file id7316 NCBI fileEvidenceTAS
GeneUBE2D1AuthorityHGNC:12474Mapping file id7321 NCBI fileEvidenceIEA
GeneUBE2D2AuthorityHGNC:12475Mapping file id7322 NCBI fileEvidenceIEA
GeneUBE2D3AuthorityHGNC:12476Mapping file id7323 NCBI fileEvidenceIEA
GeneUBE2KAuthorityHGNC:4914Mapping file id3093 NCBI fileEvidenceIEA
GeneUBE2L6AuthorityHGNC:12490Mapping file id9246 NCBI fileEvidenceIEA, TAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.