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Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Elastic fibre formation

R-MMU-1566948 in Reactome release 97: under Extracellular matrix organization, with 40 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-1566948 (human), R-RNO-1566948 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 40 genes in this mouse pathway; showing 1 to 40, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 1
GeneBmp10Authority12154Mapping file id12154 NCBI fileEvidenceIEA
GeneBmp2Authority12156Mapping file id12156 NCBI fileEvidenceIEA
GeneBmp4Authority12159Mapping file id12159 NCBI fileEvidenceIEA
GeneBmp7Authority12162Mapping file id12162 NCBI fileEvidenceIEA
GeneEfemp2Authority58859Mapping file id58859 NCBI fileEvidenceIEA
GeneElnAuthority13717Mapping file id13717 NCBI fileEvidenceIEA
GeneEmilin1Authority100952Mapping file id100952 NCBI fileEvidenceIEA
GeneEmilin2Authority246707Mapping file id246707 NCBI fileEvidenceIEA
GeneEmilin3Authority280635Mapping file id280635 NCBI fileEvidenceIEA
GeneFbln2Authority14115Mapping file id14115 NCBI fileEvidenceIEA
GeneFbln5Authority23876Mapping file id23876 NCBI fileEvidenceIEA
GeneFbn1Authority14118Mapping file id14118 NCBI fileEvidenceIEA
GeneFbn2Authority14119Mapping file id14119 NCBI fileEvidenceIEA
GeneFn1Authority14268Mapping file id14268 NCBI fileEvidenceIEA
GeneFurinAuthority18550Mapping file id18550 NCBI fileEvidenceIEA
GeneGdf5Authority14563Mapping file id14563 NCBI fileEvidenceIEA
GeneItga5Authority16402Mapping file id16402 NCBI fileEvidenceIEA
GeneItga8Authority241226Mapping file id241226 NCBI fileEvidenceIEA
GeneItgavAuthority16410Mapping file id16410 NCBI fileEvidenceIEA
GeneItgb1Authority16412Mapping file id16412 NCBI fileEvidenceIEA
GeneItgb3Authority16416Mapping file id16416 NCBI fileEvidenceIEA
GeneItgb5Authority16419Mapping file id16419 NCBI fileEvidenceIEA
GeneItgb6Authority16420Mapping file id16420 NCBI fileEvidenceIEA
GeneItgb8Authority320910Mapping file id320910 NCBI fileEvidenceIEA
GeneLoxAuthority16948Mapping file id16948 NCBI fileEvidenceIEA
GeneLoxl1Authority16949Mapping file id16949 NCBI fileEvidenceIEA
GeneLoxl2Authority94352Mapping file id94352 NCBI fileEvidenceIEA
GeneLoxl3Authority16950Mapping file id16950 NCBI fileEvidenceIEA
GeneLoxl4Authority67573Mapping file id67573 NCBI fileEvidenceIEA
GeneLtbp1Authority268977Mapping file id268977 NCBI fileEvidenceIEA
GeneLtbp2Authority16997Mapping file id16997 NCBI fileEvidenceIEA
GeneLtbp3Authority16998Mapping file id16998 NCBI fileEvidenceIEA
GeneLtbp4Authority108075Mapping file id108075 NCBI fileEvidenceIEA
GeneMfap2Authority17150Mapping file id17150 NCBI fileEvidenceIEA
GeneMfap4Authority76293Mapping file id76293 NCBI fileEvidenceIEA
GeneMfap5Authority50530Mapping file id50530 NCBI fileEvidenceIEA
GeneTgfb1Authority21803Mapping file id21803 NCBI fileEvidenceIEA
GeneTgfb2Authority21808Mapping file id21808 NCBI fileEvidenceIEA
GeneTgfb3Authority21809Mapping file idENSMUSG00000021253 Ensembl fileEvidenceIEA
GeneVtnAuthority22370Mapping file id22370 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.