Pathway Mouse Mus musculus
Read this first
TP53 Regulates Transcription of DNA Repair Genes
R-MMU-6796648 in Reactome release 97: under Transcriptional Regulation by TP53, with 42 genes placed in it by the mapping files and 0 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-6796648 (human), R-RNO-6796648 (rat). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists.
[R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments.
[R11]
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this mouse pathway
The mapping files place 42 genes in this mouse pathway; showing 1 to 42, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneCcnh | Authority66671 | Mapping file id66671 NCBI file | EvidenceIEA |
| GeneCcnt1 | Authority12455 | Mapping file id12455 NCBI file | EvidenceIEA |
| GeneCcnt2 | Authority72949 | Mapping file id72949 NCBI file | EvidenceIEA |
| GeneCdk12 | Authority69131 | Mapping file id69131 NCBI file | EvidenceIEA |
| GeneCdk13 | Authority69562 | Mapping file id69562 NCBI file | EvidenceIEA |
| GeneCdk7 | Authority12572 | Mapping file id12572 NCBI file | EvidenceIEA |
| GeneCdk9 | Authority107951 | Mapping file id107951 NCBI file | EvidenceIEA |
| GeneCtdp1 | Authority67655 | Mapping file id67655 NCBI file | EvidenceIEA |
| GeneEll | Authority13716 | Mapping file id13716 NCBI file | EvidenceIEA |
| GeneEloa | Authority27224 | Mapping file id27224 NCBI file | EvidenceIEA |
| GeneElob | Authority67673 | Mapping file id67673 NCBI file | EvidenceIEA |
| GeneEloc | Authority67923 | Mapping file id67923 NCBI file | EvidenceIEA |
| GeneErcc2 | Authority13871 | Mapping file id13871 NCBI file | EvidenceIEA |
| GeneErcc3 | Authority13872 | Mapping file id13872 NCBI file | EvidenceIEA |
| GeneGtf2f1 | Authority98053 | Mapping file id98053 NCBI file | EvidenceIEA |
| GeneGtf2f2 | Authority68705 | Mapping file id68705 NCBI file | EvidenceIEA |
| GeneGtf2h1 | Authority14884 | Mapping file id14884 NCBI file | EvidenceIEA |
| GeneGtf2h2 | Authority23894 | Mapping file id23894 NCBI file | EvidenceIEA |
| GeneGtf2h3 | Authority209357 | Mapping file id209357 NCBI file | EvidenceIEA |
| GeneGtf2h4 | Authority14885 | Mapping file id14885 NCBI file | EvidenceIEA |
| GeneGtf2h5 | Authority66467 | Mapping file id66467 NCBI file | EvidenceIEA |
| GeneMnat1 | Authority17420 | Mapping file id17420 NCBI file | EvidenceIEA |
| GeneNelfa | Authority24116 | Mapping file id24116 NCBI file | EvidenceIEA |
| GeneNelfb | Authority58202 | Mapping file id58202 NCBI file | EvidenceIEA |
| GeneNelfcd | Authority57314 | Mapping file id57314 NCBI file | EvidenceIEA |
| GeneNelfe | Authority27632 | Mapping file id27632 NCBI file | EvidenceIEA |
| GenePolr2a | Authority20020 | Mapping file id20020 NCBI file | EvidenceIEA |
| GenePolr2b | Authority231329 | Mapping file id231329 NCBI file | EvidenceIEA |
| GenePolr2c | Authority20021 | Mapping file id20021 NCBI file | EvidenceIEA |
| GenePolr2d | Authority69241 | Mapping file id69241 NCBI file | EvidenceIEA |
| GenePolr2e | Authority66420 | Mapping file id66420 NCBI file | EvidenceIEA |
| GenePolr2f | Authority69833 | Mapping file id69833 NCBI file | EvidenceIEA |
| GenePolr2g | Authority67710 | Mapping file id67710 NCBI file | EvidenceIEA |
| GenePolr2h | Authority245841 | Mapping file id245841 NCBI file | EvidenceIEA |
| GenePolr2i | Authority69920 | Mapping file id69920 NCBI file | EvidenceIEA |
| GenePolr2k | Authority17749 | Mapping file id17749 NCBI file | EvidenceIEA |
| GenePolr2l | Authority66491 | Mapping file id66491 NCBI file | EvidenceIEA |
| GeneSsrp1 | Authority20833 | Mapping file id20833 NCBI file | EvidenceIEA |
| GeneSupt16 | Authority114741 | Mapping file id114741 NCBI file | EvidenceIEA |
| GeneSupt4a | Authority20922 | Mapping file id20922 NCBI file | EvidenceIEA |
| GeneSupt5 | Authority20924 | Mapping file id20924 NCBI file | EvidenceIEA |
| GeneTcea1 | Authority21399 | Mapping file id21399 NCBI file | EvidenceIEA |
Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.
- Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Children
None: no pathway of this release's list names this one as a parent.
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.