Skip to content

Create an account and get up to 25% off.

Order

Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

RET signaling

R-MMU-8853659 in Reactome release 97: under Axon guidance, with 39 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-8853659 (human), R-RNO-8853659 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 39 genes in this mouse pathway; showing 1 to 39, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 1
GeneArtnAuthority11876Mapping file id11876 NCBI fileEvidenceIEA
GeneDok1Authority13448Mapping file id13448 NCBI fileEvidenceIEA
GeneDok2Authority13449Mapping file id13449 NCBI fileEvidenceIEA
GeneDok4Authority114255Mapping file id114255 NCBI fileEvidenceIEA
GeneDok5Authority76829Mapping file id76829 NCBI fileEvidenceIEA
GeneDok6Authority623279Mapping file id623279 NCBI fileEvidenceIEA
GeneFrs2Authority327826Mapping file id327826 NCBI fileEvidenceIEA
GeneGab1Authority14388Mapping file id14388 NCBI fileEvidenceIEA
GeneGdnfAuthority14573Mapping file id14573 NCBI fileEvidenceIEA
GeneGfra1Authority14585Mapping file id14585 NCBI fileEvidenceIEA
GeneGfra2Authority14586Mapping file id14586 NCBI fileEvidenceIEA
GeneGfra3Authority14587Mapping file id14587 NCBI fileEvidenceIEA
GeneGfra4Authority14588Mapping file id14588 NCBI fileEvidenceIEA
GeneGrb10Authority14783Mapping file id14783 NCBI fileEvidenceIEA
GeneGrb2Authority14784Mapping file id14784 NCBI fileEvidenceIEA
GeneGrb7Authority14786Mapping file id14786 NCBI fileEvidenceIEA
GeneIrs2Authority384783Mapping file id384783 NCBI fileEvidenceIEA
GeneMapk7Authority23939Mapping file id23939 NCBI fileEvidenceIEA
GeneNrtnAuthority18188Mapping file id18188 NCBI fileEvidenceIEA
GenePdlim7Authority67399Mapping file id67399 NCBI fileEvidenceIEA
GenePik3caAuthority18706Mapping file id18706 NCBI fileEvidenceIEA
GenePik3cbAuthority74769Mapping file id74769 NCBI fileEvidenceIEA
GenePik3cdAuthority18707Mapping file id18707 NCBI fileEvidenceIEA
GenePik3r1Authority18708Mapping file id18708 NCBI fileEvidenceIEA
GenePik3r2Authority18709Mapping file id18709 NCBI fileEvidenceIEA
GenePik3r3Authority18710Mapping file id18710 NCBI fileEvidenceIEA
GenePlcg1Authority18803Mapping file id18803 NCBI fileEvidenceIEA
GenePrkacaAuthority18747Mapping file id18747 NCBI fileEvidenceIEA
GenePrkacbAuthority18749Mapping file id18749 NCBI fileEvidenceIEA
GenePrkcaAuthority18750Mapping file id18750 NCBI fileEvidenceIEA
GenePspnAuthority19197Mapping file idENSMUSG00000002664 Ensembl fileEvidenceIEA
GenePtpn11Authority19247Mapping file id19247 NCBI fileEvidenceIEA
GeneRap1gapAuthority110351Mapping file id110351 NCBI fileEvidenceIEA
GeneRetAuthority19713Mapping file id19713 NCBI fileEvidenceIEA
GeneShank3Authority58234Mapping file id58234 NCBI fileEvidenceIEA
GeneShc1Authority20416Mapping file id20416 NCBI fileEvidenceIEA
GeneShc3Authority20418Mapping file id20418 NCBI fileEvidenceIEA
GeneSos1Authority20662Mapping file id20662 NCBI fileEvidenceIEA
GeneSrcAuthority20779Mapping file id20779 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.