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Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Antigen Presentation: Folding, assembly and peptide loading of class I MHC

R-MMU-983170 in Reactome release 97: under Class I MHC mediated antigen processing & presentation, with 33 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-983170 (human), R-RNO-983170 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 33 genes in this mouse pathway; showing 1 to 33, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 1
GeneB2mAuthority12010Mapping file id12010 NCBI fileEvidenceIEA
GeneBcap31Authority27061Mapping file id27061 NCBI fileEvidenceIEA
GeneCalrAuthority12317Mapping file id12317 NCBI fileEvidenceIEA
GeneCanxAuthority12330Mapping file id12330 NCBI fileEvidenceIEA
GeneErap1Authority80898Mapping file id80898 NCBI fileEvidenceIEA
GeneH2-M1Authority224756Mapping file id224756 NCBI fileEvidenceIEA
GeneH2-M10.1Authority14985Mapping file id14985 NCBI fileEvidenceIEA
GeneH2-M10.2Authority333715Mapping file id333715 NCBI fileEvidenceIEA
GeneH2-M10.3Authority110696Mapping file id110696 NCBI fileEvidenceIEA
GeneH2-M10.4Authority224753Mapping file id224753 NCBI fileEvidenceIEA
GeneH2-M10.5Authority224761Mapping file id224761 NCBI fileEvidenceIEA
GeneH2-M10.6Authority399549Mapping file id399549 NCBI fileEvidenceIEA
GeneH2-M11Authority224754Mapping file idENSMUSG00000037537 Ensembl fileEvidenceIEA
GeneH2-M2Authority14990Mapping file id14990 NCBI fileEvidenceIEA
GeneH2-M3Authority14991Mapping file id14991 NCBI fileEvidenceIEA
GeneH2-M5Authority240095Mapping file id240095 NCBI fileEvidenceIEA
GeneH2-M9Authority14997Mapping file id14997 NCBI fileEvidenceIEA
GeneH2-Q10Authority15007Mapping file id15007 NCBI fileEvidenceIEA
GeneH2-Q7Authority15018Mapping file id15018 NCBI fileEvidenceIEA
GeneH2-T22Authority15039Mapping file id15039 NCBI fileEvidenceIEA
GeneHspa5Authority14828Mapping file id14828 NCBI fileEvidenceIEA
GenePdia3Authority14827Mapping file id14827 NCBI fileEvidenceIEA
GeneSar1bAuthority66397Mapping file id66397 NCBI fileEvidenceIEA
GeneSec13Authority110379Mapping file id110379 NCBI fileEvidenceIEA
GeneSec23aAuthority20334Mapping file id20334 NCBI fileEvidenceIEA
GeneSec24aAuthority77371Mapping file id77371 NCBI fileEvidenceIEA
GeneSec24bAuthority99683Mapping file id99683 NCBI fileEvidenceIEA
GeneSec24cAuthority218811Mapping file id218811 NCBI fileEvidenceIEA
GeneSec24dAuthority69608Mapping file id69608 NCBI fileEvidenceIEA
GeneSec31aAuthority69162Mapping file id69162 NCBI fileEvidenceIEA
GeneTap1Authority21354Mapping file id21354 NCBI fileEvidenceIEA
GeneTap2Authority21355Mapping file id21355 NCBI fileEvidenceIEA
GeneTapbpAuthority21356Mapping file id21356 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.