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Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Affinity selection of immunoglobulins

R-MMU-9938027 in Reactome release 97: under Immunoglobulin maturation, with 104 genes placed in it by the mapping files and 2 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9938027 (human), R-RNO-9938027 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 104 genes in this mouse pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 2
GeneActr10Authority56444Mapping file id56444 NCBI fileEvidenceIEA
GeneActr1aAuthority54130Mapping file id54130 NCBI fileEvidenceIEA
GeneActr1bAuthority226977Mapping file id226977 NCBI fileEvidenceIEA
GeneAicdaAuthority11628Mapping file id11628 NCBI fileEvidenceIEA
GeneApex2Authority77622Mapping file idENSMUSG00000025269 Ensembl fileEvidenceIEA
GeneCenpeAuthority229841Mapping file id229841 NCBI fileEvidenceIEA
GeneCtnnbl1Authority66642Mapping file id66642 NCBI fileEvidenceIEA
GeneCtsaAuthority19025Mapping file id19025 NCBI fileEvidenceIEA
GeneCtsbAuthority13030Mapping file id13030 NCBI fileEvidenceIEA
GeneCtscAuthority13032Mapping file id13032 NCBI fileEvidenceIEA
GeneCtsdAuthority13033Mapping file id13033 NCBI fileEvidenceIEA
GeneCtseAuthority13034Mapping file id13034 NCBI fileEvidenceIEA
GeneCtsfAuthority56464Mapping file id56464 NCBI fileEvidenceIEA
GeneCtshAuthority13036Mapping file id13036 NCBI fileEvidenceIEA
GeneCtskAuthority13038Mapping file id13038 NCBI fileEvidenceIEA
GeneCtslAuthority13039Mapping file id13039 NCBI fileEvidenceIEA
GeneCtsoAuthority229445Mapping file id229445 NCBI fileEvidenceIEA
GeneCtssAuthority13040Mapping file id13040 NCBI fileEvidenceIEA
GeneDctn1Authority13191Mapping file id13191 NCBI fileEvidenceIEA
GeneDctn2Authority69654Mapping file id69654 NCBI fileEvidenceIEA
GeneDctn3Authority53598Mapping file id53598 NCBI fileEvidenceIEA
GeneDctn4Authority67665Mapping file id67665 NCBI fileEvidenceIEA
GeneDctn5Authority59288Mapping file id59288 NCBI fileEvidenceIEA
GeneDctn6Authority22428Mapping file id22428 NCBI fileEvidenceIEA
GeneDync1h1Authority13424Mapping file id13424 NCBI fileEvidenceIEA
GeneDync1i1Authority13426Mapping file id13426 NCBI fileEvidenceIEA
GeneDync1i2Authority13427Mapping file id13427 NCBI fileEvidenceIEA
GeneDync1li1Authority235661Mapping file id235661 NCBI fileEvidenceIEA
GeneDync1li2Authority234663Mapping file id234663 NCBI fileEvidenceIEA
GeneDynll1Authority56455Mapping file id56455 NCBI fileEvidenceIEA
GeneDynll2Authority68097Mapping file id68097 NCBI fileEvidenceIEA
GeneExo1Authority26909Mapping file id26909 NCBI fileEvidenceIEA
GeneH2-DMaAuthority14998Mapping file idENSMUSG00000037649 Ensembl fileEvidenceIEA
GeneH2-DMb1Authority14999Mapping file idENSMUSG00000079547 Ensembl fileEvidenceIEA
GeneH2-EaAuthority100504404Mapping file idENSMUSG00000036322 Ensembl fileEvidenceIEA
GeneH2-Eb1Authority14969Mapping file idENSMUSG00000060586 Ensembl fileEvidenceIEA
GeneH2-Eb2Authority381091Mapping file id381091 NCBI fileEvidenceIEA
GeneH2-OaAuthority15001Mapping file id15001 NCBI fileEvidenceIEA
GeneH2-ObAuthority15002Mapping file id15002 NCBI fileEvidenceIEA
GeneIfi30Authority65972Mapping file id65972 NCBI fileEvidenceIEA
GeneKif11Authority16551Mapping file id16551 NCBI fileEvidenceIEA
GeneKif15Authority209737Mapping file id209737 NCBI fileEvidenceIEA
GeneKif18aAuthority228421Mapping file id228421 NCBI fileEvidenceIEA
GeneKif20aAuthority19348Mapping file id19348 NCBI fileEvidenceIEA
GeneKif22Authority110033Mapping file id110033 NCBI fileEvidenceIEA
GeneKif23Authority71819Mapping file id71819 NCBI fileEvidenceIEA
GeneKif26aAuthority668303Mapping file id668303 NCBI fileEvidenceIEA
GeneKif2aAuthority16563Mapping file id16563 NCBI fileEvidenceIEA
GeneKif2bAuthority73470Mapping file id73470 NCBI fileEvidenceIEA
GeneKif2cAuthority73804Mapping file id73804 NCBI fileEvidenceIEA
GeneKif3aAuthority16568Mapping file id16568 NCBI fileEvidenceIEA
GeneKif3bAuthority16569Mapping file id16569 NCBI fileEvidenceIEA
GeneKif3cAuthority16570Mapping file id16570 NCBI fileEvidenceIEA
GeneKif4Authority16571Mapping file id16571 NCBI fileEvidenceIEA
GeneKif5aAuthority16572Mapping file id16572 NCBI fileEvidenceIEA
GeneKif5bAuthority16573Mapping file id16573 NCBI fileEvidenceIEA
GeneKifap3Authority16579Mapping file id16579 NCBI fileEvidenceIEA
GeneKlc1Authority16593Mapping file idENSMUSG00000021288 Ensembl fileEvidenceIEA
GeneKlc2Authority16594Mapping file idENSMUSG00000024862 Ensembl fileEvidenceIEA
GeneKlc3Authority232943Mapping file id232943 NCBI fileEvidenceIEA
GeneKlc4Authority74764Mapping file id74764 NCBI fileEvidenceIEA
GeneMad2l2Authority71890Mapping file id71890 NCBI fileEvidenceIEA
GeneMcm3apAuthority54387Mapping file idENSMUSG00000001150 Ensembl fileEvidenceIEA
GeneMlh1Authority17350Mapping file id17350 NCBI fileEvidenceIEA
GeneMsh2Authority17685Mapping file id17685 NCBI fileEvidenceIEA
GeneMsh6Authority17688Mapping file id17688 NCBI fileEvidenceIEA
GeneOsbpl1aAuthority64291Mapping file id64291 NCBI fileEvidenceIEA
GenePcnaAuthority18538Mapping file id18538 NCBI fileEvidenceIEA
GenePms2Authority18861Mapping file id18861 NCBI fileEvidenceIEA
GenePold2Authority18972Mapping file id18972 NCBI fileEvidenceIEA
GenePold3Authority67967Mapping file id67967 NCBI fileEvidenceIEA
GenePolhAuthority80905Mapping file id80905 NCBI fileEvidenceIEA
GenePoliAuthority26447Mapping file id26447 NCBI fileEvidenceIEA
GeneRab7Authority19349Mapping file id19349 NCBI fileEvidenceIEA
GeneRacgap1Authority26934Mapping file id26934 NCBI fileEvidenceIEA
GeneRev1Authority56210Mapping file id56210 NCBI fileEvidenceIEA
GeneRev3lAuthority19714Mapping file id19714 NCBI fileEvidenceIEA
GeneRfc1Authority19687Mapping file id19687 NCBI fileEvidenceIEA
GeneRfc2Authority19718Mapping file id19718 NCBI fileEvidenceIEA
GeneRfc3Authority69263Mapping file id69263 NCBI fileEvidenceIEA
GeneRfc4Authority106344Mapping file id106344 NCBI fileEvidenceIEA
GeneRfc5Authority72151Mapping file id72151 NCBI fileEvidenceIEA
GeneRilpAuthority280408Mapping file id280408 NCBI fileEvidenceIEA
GeneRps27aAuthority78294Mapping file id78294 NCBI fileEvidenceIEA
GeneSptbn2Authority20743Mapping file id20743 NCBI fileEvidenceIEA
GeneTuba1aAuthority22142Mapping file id22142 NCBI fileEvidenceIEA
GeneTuba1bAuthority22143Mapping file id22143 NCBI fileEvidenceIEA
GeneTuba1cAuthority22146Mapping file id22146 NCBI fileEvidenceIEA
GeneTuba3aAuthority22144Mapping file id22144 NCBI fileEvidenceIEA
GeneTuba3bAuthority22147Mapping file id22147 NCBI fileEvidenceIEA
GeneTuba4aAuthority22145Mapping file id22145 NCBI fileEvidenceIEA
GeneTuba8Authority53857Mapping file id53857 NCBI fileEvidenceIEA
GeneTubal3Authority238463Mapping file id238463 NCBI fileEvidenceIEA
GeneTubb1Authority545486Mapping file id545486 NCBI fileEvidenceIEA
GeneTubb2aAuthority22151Mapping file id22151 NCBI fileEvidenceIEA
GeneTubb2bAuthority73710Mapping file id73710 NCBI fileEvidenceIEA
GeneTubb3Authority22152Mapping file id22152 NCBI fileEvidenceIEA
GeneTubb4aAuthority22153Mapping file id22153 NCBI fileEvidenceIEA
GeneTubb4bAuthority227613Mapping file id227613 NCBI fileEvidenceIEA
GeneTubb6Authority67951Mapping file id67951 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.