Skip to content

Create an account and get up to 25% off.

Order

Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Activation of STAT3 by cadherin engagement

R-MMU-9958825 in Reactome release 97: under Adherens junctions interactions, with 42 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9958825 (human), R-RNO-9958825 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 42 genes in this mouse pathway; showing 1 to 42, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 1
GeneActa1Authority11459Mapping file id11459 NCBI fileEvidenceIEA
GeneActa2Authority11475Mapping file id11475 NCBI fileEvidenceIEA
GeneActbAuthority11461Mapping file id11461 NCBI fileEvidenceIEA
GeneActc1Authority11464Mapping file id11464 NCBI fileEvidenceIEA
GeneActg1Authority11465Mapping file id11465 NCBI fileEvidenceIEA
GeneActg2Authority11468Mapping file id11468 NCBI fileEvidenceIEA
GeneBirc2Authority11797Mapping file id11797 NCBI fileEvidenceIEA
GeneCbll1Authority104836Mapping file id104836 NCBI fileEvidenceIEA
GeneCdc42Authority12540Mapping file id12540 NCBI fileEvidenceIEA
GeneCdh1Authority12550Mapping file id12550 NCBI fileEvidenceIEA
GeneCdh11Authority12552Mapping file id12552 NCBI fileEvidenceIEA
GeneCtnna1Authority12385Mapping file id12385 NCBI fileEvidenceIEA
GeneCtnnb1Authority12387Mapping file id12387 NCBI fileEvidenceIEA
GeneCtnnd1Authority12388Mapping file id12388 NCBI fileEvidenceIEA
GeneCtsbAuthority13030Mapping file id13030 NCBI fileEvidenceIEA
GeneCtslAuthority13039Mapping file id13039 NCBI fileEvidenceIEA
GeneCtssAuthority13040Mapping file id13040 NCBI fileEvidenceIEA
GeneDock1Authority330662Mapping file id330662 NCBI fileEvidenceIEA
GeneElmo1Authority140580Mapping file id140580 NCBI fileEvidenceIEA
GeneFarp2Authority227377Mapping file id227377 NCBI fileEvidenceIEA
GeneHace1Authority209462Mapping file id209462 NCBI fileEvidenceIEA
GeneIl6Authority16193Mapping file id16193 NCBI fileEvidenceIEA
GeneIl6raAuthority16194Mapping file id16194 NCBI fileEvidenceIEA
GeneIl6stAuthority16195Mapping file id16195 NCBI fileEvidenceIEA
GeneJak2Authority16452Mapping file id16452 NCBI fileEvidenceIEA
GeneJupAuthority16480Mapping file id16480 NCBI fileEvidenceIEA
GeneNfkb1Authority18033Mapping file id18033 NCBI fileEvidenceIEA
GeneRac1Authority19353Mapping file id19353 NCBI fileEvidenceIEA
GeneRelaAuthority19697Mapping file id19697 NCBI fileEvidenceIEA
GeneRnf19bAuthority75234Mapping file id75234 NCBI fileEvidenceIEA
GeneRps27aAuthority78294Mapping file id78294 NCBI fileEvidenceIEA
GeneSrcAuthority20779Mapping file id20779 NCBI fileEvidenceIEA
GeneStat3Authority20848Mapping file id20848 NCBI fileEvidenceIEA
GeneTraf7Authority224619Mapping file idENSMUSG00000052752 Ensembl fileEvidenceIEA
GeneTyk2Authority54721Mapping file id54721 NCBI fileEvidenceIEA
GeneUba52Authority22186Mapping file id22186 NCBI fileEvidenceIEA
GeneUba52rtAuthority666586Mapping file idENSMUSG00000068240 Ensembl fileEvidenceIEA
GeneUbbAuthority22187Mapping file id22187 NCBI fileEvidenceIEA
GeneUbcAuthority22190Mapping file id22190 NCBI fileEvidenceIEA
GeneVav2Authority22325Mapping file id22325 NCBI fileEvidenceIEA
GeneVclAuthority22330Mapping file id22330 NCBI fileEvidenceIEA
GeneXiapAuthority11798Mapping file id11798 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.