Skip to content
Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

p75 NTR receptor-mediated signalling

R-RNO-193704 in Reactome release 97: under Death Receptor Signaling, with 89 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-193704 (human), R-MMU-193704 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 89 genes in this rat pathway; showing 1 to 89, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAbrAuthority287537Mapping file id287537 NCBI fileEvidenceIEA
GeneAdam17Authority57027Mapping file id57027 NCBI fileEvidenceIEA
GeneAkap13Authority293024Mapping file id293024 NCBI fileEvidenceIEA
GeneAph1aAuthority365872Mapping file idENSRNOG00000023816 Ensembl fileEvidenceIEA
GeneAph1bAuthority300802Mapping file id300802 NCBI fileEvidenceIEA
GeneArhgdiaAuthority360678Mapping file id360678 NCBI fileEvidenceIEA
GeneArhgef1Authority60323Mapping file idENSRNOG00000020130 Ensembl fileEvidenceIEA
GeneArhgef10Authority306618Mapping file id306618 NCBI fileEvidenceIEA
GeneArhgef10lAuthority684811Mapping file idENSRNOG00000050636 Ensembl fileEvidenceIEA
GeneArhgef11Authority78966Mapping file id78966 NCBI fileEvidenceIEA
GeneArhgef12Authority367072Mapping file idENSRNOG00000008924 Ensembl fileEvidenceIEA
GeneArhgef15Authority287418Mapping file id287418 NCBI fileEvidenceIEA
GeneArhgef16Authority687105Mapping file id687105 NCBI fileEvidenceIEA
GeneArhgef17Authority120099896Mapping file id120099896 NCBI fileEvidenceIEA
GeneArhgef19Authority362648Mapping file id362648 NCBI fileEvidenceIEA
GeneArhgef2Authority310635Mapping file id310635 NCBI fileEvidenceIEA
GeneArhgef25Authority314904Mapping file idENSRNOG00000005034 Ensembl fileEvidenceIEA
GeneArhgef26Authority310460Mapping file id310460 NCBI fileEvidenceIEA
GeneArhgef3Authority290541Mapping file idENSRNOG00000014363 Ensembl fileEvidenceIEA
GeneArhgef33Authority500608Mapping file id500608 NCBI fileEvidenceIEA
GeneArhgef37Authority307398Mapping file id307398 NCBI fileEvidenceIEA
GeneArhgef38Authority295449Mapping file id295449 NCBI fileEvidenceIEA
GeneArhgef39Authority298404Mapping file id298404 NCBI fileEvidenceIEA
GeneArhgef4Authority301334Mapping file id301334 NCBI fileEvidenceIEA
GeneArhgef5Authority140898Mapping file id140898 NCBI fileEvidenceIEA
GeneArhgef6Authority363509Mapping file id363509 NCBI fileEvidenceIEA
GeneArhgef7Authority114559Mapping file id114559 NCBI fileEvidenceIEA
GeneArhgef9Authority66013Mapping file id66013 NCBI fileEvidenceIEA
GeneBadAuthority64639Mapping file id64639 NCBI fileEvidenceIEA
GeneBcl2l11Authority64547Mapping file id64547 NCBI fileEvidenceIEA
GeneBex3Authority117089Mapping file id117089 NCBI fileEvidenceIEA
GeneCa14Authority791259Mapping file idENSRNOG00000023162 Ensembl fileEvidenceIEA
GeneCasp2Authority64314Mapping file id64314 NCBI fileEvidenceIEA
GeneCasp3Authority25402Mapping file id25402 NCBI fileEvidenceIEA
GeneEct2Authority361921Mapping file id361921 NCBI fileEvidenceIEA
GeneFgd1Authority363460Mapping file id363460 NCBI fileEvidenceIEA
GeneFgd2Authority309653Mapping file id309653 NCBI fileEvidenceIEA
GeneFgd3Authority361223Mapping file idENSRNOG00000016225 Ensembl fileEvidenceIEA
GeneFgd4Authority246174Mapping file id246174 NCBI fileEvidenceIEA
GeneGna13Authority303634Mapping file id303634 NCBI fileEvidenceIEA
GeneIkbkbAuthority84351Mapping file id84351 NCBI fileEvidenceIEA
GeneIrak1Authority363520Mapping file id363520 NCBI fileEvidenceIEA
GeneItgb3bpAuthority362548Mapping file id362548 NCBI fileEvidenceIEA
GeneItsn1Authority29491Mapping file id29491 NCBI fileEvidenceIEA
GeneKalrnAuthority84009Mapping file id84009 NCBI fileEvidenceIEA
GeneKxd1Authority498606Mapping file idENSRNOG00000019971 Ensembl fileEvidenceIEA
GeneLingo1Authority315691Mapping file idENSRNOG00000017193 Ensembl fileEvidenceIEA
GeneMagAuthority29409Mapping file id29409 NCBI fileEvidenceIEA
GeneMapk8Authority116554Mapping file id116554 NCBI fileEvidenceIEA
GeneMcf2Authority317598Mapping file id317598 NCBI fileEvidenceIEA
GeneMcf2lAuthority117020Mapping file id117020 NCBI fileEvidenceIEA
GeneMyd88Authority301059Mapping file id301059 NCBI fileEvidenceIEA
GeneNcstnAuthority289231Mapping file id289231 NCBI fileEvidenceIEA
GeneNet1Authority307098Mapping file id307098 NCBI fileEvidenceIEA
GeneNfkb1Authority81736Mapping file id81736 NCBI fileEvidenceIEA
GeneNfkbiaAuthority25493Mapping file id25493 NCBI fileEvidenceIEA
GeneNgefAuthority246217Mapping file idENSRNOG00000016653 Ensembl fileEvidenceIEA
GeneNgfAuthority310738Mapping file id310738 NCBI fileEvidenceIEA
GeneNgfrAuthority24596Mapping file id24596 NCBI fileEvidenceIEA
GeneObscnAuthority338458Mapping file idENSRNOG00000058068 Ensembl fileEvidenceIEA
GeneOmgAuthority450224Mapping file id450224 NCBI fileEvidenceIEA
GenePlekhg2Authority292750Mapping file idENSRNOG00000030266 Ensembl fileEvidenceIEA
GenePlekhg5Authority310999Mapping file id310999 NCBI fileEvidenceIEA
GenePrex1Authority311647Mapping file id311647 NCBI fileEvidenceIEA
GenePrkciAuthority84006Mapping file id84006 NCBI fileEvidenceIEA
GenePsen1Authority29192Mapping file id29192 NCBI fileEvidenceIEA
GenePsen2Authority81751Mapping file id81751 NCBI fileEvidenceIEA
GenePsenenAuthority292788Mapping file id292788 NCBI fileEvidenceIEA
GeneRac1Authority363875Mapping file id363875 NCBI fileEvidenceIEA
GeneRasgrf2Authority114513Mapping file id114513 NCBI fileEvidenceIEA
GeneRelaAuthority309165Mapping file idENSRNOG00000030888 Ensembl fileEvidenceIEA
GeneRhoaAuthority117273Mapping file id117273 NCBI fileEvidenceIEA
GeneRipk2Authority362491Mapping file id362491 NCBI fileEvidenceIEA
GeneRps27aAuthority100912032Mapping file id100912032 NCBI fileEvidenceIEA
GeneRtn4Authority83765Mapping file id83765 NCBI fileEvidenceIEA
GeneSos1Authority313845Mapping file id313845 NCBI fileEvidenceIEA
GeneSos2Authority85384Mapping file idENSRNOG00000004826 Ensembl fileEvidenceIEA
GeneSqstm1Authority113894Mapping file id113894 NCBI fileEvidenceIEA
GeneTiam1Authority304109Mapping file id304109 NCBI fileEvidenceIEA
GeneTiam2Authority100362710Mapping file id100362710 NCBI fileEvidenceIEA
GeneTraf6Authority311245Mapping file id311245 NCBI fileEvidenceIEA
GeneTrioAuthority310192Mapping file id310192 NCBI fileEvidenceIEA
GeneUba52Authority64156Mapping file id64156 NCBI fileEvidenceIEA
GeneUbbAuthority192255Mapping file id192255 NCBI fileEvidenceIEA
GeneUbcAuthority50522Mapping file id50522 NCBI fileEvidenceIEA
GeneVav1Authority25156Mapping file idENSRNOG00000050430 Ensembl fileEvidenceIEA
GeneVav2Authority296603Mapping file idENSRNOG00000007422 Ensembl fileEvidenceIEA
GeneVav3Authority295378Mapping file id295378 NCBI fileEvidenceIEA
GeneYwhaeAuthority29753Mapping file id29753 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.