Pathway Rat Rattus norvegicus
Read this first
ER to Golgi Anterograde Transport
R-RNO-199977 in Reactome release 97: under 2 parents, with 142 genes placed in it by the mapping files and 3 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-199977 (human), R-MMU-199977 (mouse). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists.
[R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments.
[R11]
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this rat pathway
The mapping files place 142 genes in this rat pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneActr10 | Authority299121 | Mapping file id299121 NCBI file | EvidenceIEA |
| GeneActr1a | Authority294010 | Mapping file id294010 NCBI file | EvidenceIEA |
| GeneAnk1 | Authority306570 | Mapping file idENSRNOG00000018241 Ensembl file | EvidenceIEA |
| GeneAnkrd28 | Authority306264 | Mapping file id306264 NCBI file | EvidenceIEA |
| GeneArcn1 | Authority300674 | Mapping file id300674 NCBI file | EvidenceIEA |
| GeneAreg | Authority29183 | Mapping file id29183 NCBI file | EvidenceIEA |
| GeneArf1 | Authority64310 | Mapping file id64310 NCBI file | EvidenceIEA |
| GeneArf3 | Authority140940 | Mapping file id140940 NCBI file | EvidenceIEA |
| GeneArf4 | Authority79120 | Mapping file id79120 NCBI file | EvidenceIEA |
| GeneArf5 | Authority79117 | Mapping file id79117 NCBI file | EvidenceIEA |
| GeneArfgap1 | Authority246310 | Mapping file id246310 NCBI file | EvidenceIEA |
| GeneArfgap2 | Authority362162 | Mapping file id362162 NCBI file | EvidenceIEA |
| GeneArfgap3 | Authority503165 | Mapping file id503165 NCBI file | EvidenceIEA |
| GeneBet1 | Authority29631 | Mapping file id29631 NCBI file | EvidenceIEA |
| GeneBet1l | Authority54400 | Mapping file id54400 NCBI file | EvidenceIEA |
| GeneCd55 | Authority64036 | Mapping file idENSRNOG00000003927 Ensembl file | EvidenceIEA |
| GeneCd59b | Authority25407 | Mapping file id25407 NCBI file | EvidenceIEA |
| GeneCnih1 | Authority289994 | Mapping file id289994 NCBI file | EvidenceIEA |
| GeneCnih2 | Authority361705 | Mapping file id361705 NCBI file | EvidenceIEA |
| GeneCnih3 | Authority690252 | Mapping file id690252 NCBI file | EvidenceIEA |
| GeneCog1 | Authority303652 | Mapping file idENSRNOG00000002795 Ensembl file | EvidenceIEA |
| GeneCog2 | Authority690961 | Mapping file id690961 NCBI file | EvidenceIEA |
| GeneCog3 | Authority361073 | Mapping file id361073 NCBI file | EvidenceIEA |
| GeneCog4 | Authority361407 | Mapping file idENSRNOG00000017745 Ensembl file | EvidenceIEA |
| GeneCog5 | Authority314030 | Mapping file id314030 NCBI file | EvidenceIEA |
| GeneCog6 | Authority310411 | Mapping file id310411 NCBI file | EvidenceIEA |
| GeneCog7 | Authority293456 | Mapping file id293456 NCBI file | EvidenceIEA |
| GeneCog8 | Authority291990 | Mapping file id291990 NCBI file | EvidenceIEA |
| GeneCol7a1 | Authority301012 | Mapping file id301012 NCBI file | EvidenceIEA |
| GeneCopa | Authority304978 | Mapping file id304978 NCBI file | EvidenceIEA |
| GeneCopb1 | Authority114023 | Mapping file id114023 NCBI file | EvidenceIEA |
| GeneCopb2 | Authority60384 | Mapping file id60384 NCBI file | EvidenceIEA |
| GeneCope | Authority290659 | Mapping file id290659 NCBI file | EvidenceIEA |
| GeneCopg1 | Authority297428 | Mapping file id297428 NCBI file | EvidenceIEA |
| GeneCopg2 | Authority301742 | Mapping file idENSRNOG00000011014 Ensembl file | EvidenceIEA |
| GeneCopz1 | Authority315345 | Mapping file idENSRNOG00000036835 Ensembl file | EvidenceIEA |
| GeneCopz2 | Authority360611 | Mapping file idENSRNOG00000009225 Ensembl file | EvidenceIEA |
| GeneCsnk1d | Authority64462 | Mapping file id64462 NCBI file | EvidenceIEA |
| GeneCtsc | Authority25423 | Mapping file id25423 NCBI file | EvidenceIEA |
| GeneCtsz | Authority252929 | Mapping file id252929 NCBI file | EvidenceIEA |
| GeneDctn1 | Authority29167 | Mapping file id29167 NCBI file | EvidenceIEA |
| GeneDctn2 | Authority299850 | Mapping file id299850 NCBI file | EvidenceIEA |
| GeneDctn3l1 | Authority498977 | Mapping file idENSRNOG00000081039 Ensembl file | EvidenceIEA |
| GeneDctn4 | Authority84428 | Mapping file id84428 NCBI file | EvidenceIEA |
| GeneDctn5 | Authority308961 | Mapping file idENSRNOG00000018048 Ensembl file | EvidenceIEA |
| GeneDync1h1 | Authority29489 | Mapping file id29489 NCBI file | EvidenceIEA |
| GeneDync1i1 | Authority29564 | Mapping file id29564 NCBI file | EvidenceIEA |
| GeneDync1i2 | Authority116659 | Mapping file idENSRNOG00000009781 Ensembl file | EvidenceIEA |
| GeneDync1li1 | Authority252902 | Mapping file id252902 NCBI file | EvidenceIEA |
| GeneDync1li2 | Authority81655 | Mapping file id81655 NCBI file | EvidenceIEA |
| GeneDynll1 | Authority58945 | Mapping file id58945 NCBI file | EvidenceIEA |
| GeneDynll2 | Authority140734 | Mapping file id140734 NCBI file | EvidenceIEA |
| GeneF8 | Authority302470 | Mapping file id302470 NCBI file | EvidenceIEA |
| GeneFolr1 | Authority171049 | Mapping file id171049 NCBI file | EvidenceIEA |
| GeneGbf1 | Authority309451 | Mapping file id309451 NCBI file | EvidenceIEA |
| GeneGolga2 | Authority64528 | Mapping file id64528 NCBI file | EvidenceIEA |
| GeneGolgb1 | Authority192243 | Mapping file id192243 NCBI file | EvidenceIEA |
| GeneGosr1 | Authority94189 | Mapping file id94189 NCBI file | EvidenceIEA |
| GeneGosr2 | Authority64154 | Mapping file id64154 NCBI file | EvidenceIEA |
| GeneGria1 | Authority50592 | Mapping file id50592 NCBI file | EvidenceIEA |
| GeneIns1 | Authority24505 | Mapping file id24505 NCBI file | EvidenceIEA |
| GeneIns2 | Authority24506 | Mapping file id24506 NCBI file | EvidenceIEA |
| GeneKdelr1 | Authority361577 | Mapping file id361577 NCBI file | EvidenceIEA |
| GeneKdelr2 | Authority304290 | Mapping file id304290 NCBI file | EvidenceIEA |
| GeneLman1 | Authority116666 | Mapping file id116666 NCBI file | EvidenceIEA |
| GeneLman1l | Authority300743 | Mapping file id300743 NCBI file | EvidenceIEA |
| GeneLman2 | Authority290994 | Mapping file id290994 NCBI file | EvidenceIEA |
| GeneLman2l | Authority301343 | Mapping file idENSRNOG00000015699 Ensembl file | EvidenceIEA |
| GeneMcfd2 | Authority246117 | Mapping file id246117 NCBI file | EvidenceIEA |
| GeneMia2 | Authority100912115 | Mapping file id100912115 NCBI file | EvidenceIEA |
| GeneMia3 | Authority683007 | Mapping file id683007 NCBI file | EvidenceIEA |
| GeneNapa | Authority140673 | Mapping file id140673 NCBI file | EvidenceIEA |
| GeneNapb | Authority499903 | Mapping file idENSRNOG00000004753 Ensembl file | EvidenceIEA |
| GeneNapg | Authority307382 | Mapping file idENSRNOG00000018914 Ensembl file | EvidenceIEA |
| GeneNsf | Authority60355 | Mapping file id60355 NCBI file | EvidenceIEA |
| GenePpp6c | Authority171121 | Mapping file id171121 NCBI file | EvidenceIEA |
| GenePpp6r3 | Authority309144 | Mapping file id309144 NCBI file | EvidenceIEA |
| GenePreb | Authority58842 | Mapping file id58842 NCBI file | EvidenceIEA |
| GeneRab1a | Authority81754 | Mapping file id81754 NCBI file | EvidenceIEA |
| GeneRab1b | Authority100126191 | Mapping file idENSRNOG00000070897 Ensembl file | EvidenceIEA |
| GeneRab1b-ps1 | Authority361706 | Mapping file idENSRNOG00000050510 Ensembl file | EvidenceIEA |
| GeneSar1b | Authority287276 | Mapping file id287276 NCBI file | EvidenceIEA |
| GeneScfd1 | Authority54350 | Mapping file id54350 NCBI file | EvidenceIEA |
| GeneSec13 | Authority297522 | Mapping file id297522 NCBI file | EvidenceIEA |
| GeneSec16a | Authority100360302 | Mapping file id100360302 NCBI file | EvidenceIEA |
| GeneSec16b | Authority89868 | Mapping file id89868 NCBI file | EvidenceIEA |
| GeneSec22a | Authority117513 | Mapping file id117513 NCBI file | EvidenceIEA |
| GeneSec22c | Authority687022 | Mapping file idENSRNOG00000086885 Ensembl file | EvidenceIEA |
| GeneSec23a | Authority58817 | Mapping file id58817 NCBI file | EvidenceIEA |
| GeneSec23ip | Authority309010 | Mapping file id309010 NCBI file | EvidenceIEA |
| GeneSec24a | Authority287275 | Mapping file id287275 NCBI file | EvidenceIEA |
| GeneSec24b | Authority295461 | Mapping file id295461 NCBI file | EvidenceIEA |
| GeneSec24c | Authority685144 | Mapping file id685144 NCBI file | EvidenceIEA |
| GeneSec24d | Authority310843 | Mapping file idENSRNOG00000014872 Ensembl file | EvidenceIEA |
| GeneSec31a | Authority93646 | Mapping file id93646 NCBI file | EvidenceIEA |
| GeneSec31b | Authority309433 | Mapping file idENSRNOG00000025781 Ensembl file | EvidenceIEA |
| GeneSerpina1 | Authority24648 | Mapping file id24648 NCBI file | EvidenceIEA |
| GeneSpta1 | Authority289257 | Mapping file id289257 NCBI file | EvidenceIEA |
| GeneSptan1 | Authority64159 | Mapping file id64159 NCBI file | EvidenceIEA |
| GeneSptb | Authority314251 | Mapping file id314251 NCBI file | EvidenceIEA |
Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.
- Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Parents
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.