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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

ER to Golgi Anterograde Transport

R-RNO-199977 in Reactome release 97: under 2 parents, with 142 genes placed in it by the mapping files and 3 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-199977 (human), R-MMU-199977 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 142 genes in this rat pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 2
GeneActr10Authority299121Mapping file id299121 NCBI fileEvidenceIEA
GeneActr1aAuthority294010Mapping file id294010 NCBI fileEvidenceIEA
GeneAnk1Authority306570Mapping file idENSRNOG00000018241 Ensembl fileEvidenceIEA
GeneAnkrd28Authority306264Mapping file id306264 NCBI fileEvidenceIEA
GeneArcn1Authority300674Mapping file id300674 NCBI fileEvidenceIEA
GeneAregAuthority29183Mapping file id29183 NCBI fileEvidenceIEA
GeneArf1Authority64310Mapping file id64310 NCBI fileEvidenceIEA
GeneArf3Authority140940Mapping file id140940 NCBI fileEvidenceIEA
GeneArf4Authority79120Mapping file id79120 NCBI fileEvidenceIEA
GeneArf5Authority79117Mapping file id79117 NCBI fileEvidenceIEA
GeneArfgap1Authority246310Mapping file id246310 NCBI fileEvidenceIEA
GeneArfgap2Authority362162Mapping file id362162 NCBI fileEvidenceIEA
GeneArfgap3Authority503165Mapping file id503165 NCBI fileEvidenceIEA
GeneBet1Authority29631Mapping file id29631 NCBI fileEvidenceIEA
GeneBet1lAuthority54400Mapping file id54400 NCBI fileEvidenceIEA
GeneCd55Authority64036Mapping file idENSRNOG00000003927 Ensembl fileEvidenceIEA
GeneCd59bAuthority25407Mapping file id25407 NCBI fileEvidenceIEA
GeneCnih1Authority289994Mapping file id289994 NCBI fileEvidenceIEA
GeneCnih2Authority361705Mapping file id361705 NCBI fileEvidenceIEA
GeneCnih3Authority690252Mapping file id690252 NCBI fileEvidenceIEA
GeneCog1Authority303652Mapping file idENSRNOG00000002795 Ensembl fileEvidenceIEA
GeneCog2Authority690961Mapping file id690961 NCBI fileEvidenceIEA
GeneCog3Authority361073Mapping file id361073 NCBI fileEvidenceIEA
GeneCog4Authority361407Mapping file idENSRNOG00000017745 Ensembl fileEvidenceIEA
GeneCog5Authority314030Mapping file id314030 NCBI fileEvidenceIEA
GeneCog6Authority310411Mapping file id310411 NCBI fileEvidenceIEA
GeneCog7Authority293456Mapping file id293456 NCBI fileEvidenceIEA
GeneCog8Authority291990Mapping file id291990 NCBI fileEvidenceIEA
GeneCol7a1Authority301012Mapping file id301012 NCBI fileEvidenceIEA
GeneCopaAuthority304978Mapping file id304978 NCBI fileEvidenceIEA
GeneCopb1Authority114023Mapping file id114023 NCBI fileEvidenceIEA
GeneCopb2Authority60384Mapping file id60384 NCBI fileEvidenceIEA
GeneCopeAuthority290659Mapping file id290659 NCBI fileEvidenceIEA
GeneCopg1Authority297428Mapping file id297428 NCBI fileEvidenceIEA
GeneCopg2Authority301742Mapping file idENSRNOG00000011014 Ensembl fileEvidenceIEA
GeneCopz1Authority315345Mapping file idENSRNOG00000036835 Ensembl fileEvidenceIEA
GeneCopz2Authority360611Mapping file idENSRNOG00000009225 Ensembl fileEvidenceIEA
GeneCsnk1dAuthority64462Mapping file id64462 NCBI fileEvidenceIEA
GeneCtscAuthority25423Mapping file id25423 NCBI fileEvidenceIEA
GeneCtszAuthority252929Mapping file id252929 NCBI fileEvidenceIEA
GeneDctn1Authority29167Mapping file id29167 NCBI fileEvidenceIEA
GeneDctn2Authority299850Mapping file id299850 NCBI fileEvidenceIEA
GeneDctn3l1Authority498977Mapping file idENSRNOG00000081039 Ensembl fileEvidenceIEA
GeneDctn4Authority84428Mapping file id84428 NCBI fileEvidenceIEA
GeneDctn5Authority308961Mapping file idENSRNOG00000018048 Ensembl fileEvidenceIEA
GeneDync1h1Authority29489Mapping file id29489 NCBI fileEvidenceIEA
GeneDync1i1Authority29564Mapping file id29564 NCBI fileEvidenceIEA
GeneDync1i2Authority116659Mapping file idENSRNOG00000009781 Ensembl fileEvidenceIEA
GeneDync1li1Authority252902Mapping file id252902 NCBI fileEvidenceIEA
GeneDync1li2Authority81655Mapping file id81655 NCBI fileEvidenceIEA
GeneDynll1Authority58945Mapping file id58945 NCBI fileEvidenceIEA
GeneDynll2Authority140734Mapping file id140734 NCBI fileEvidenceIEA
GeneF8Authority302470Mapping file id302470 NCBI fileEvidenceIEA
GeneFolr1Authority171049Mapping file id171049 NCBI fileEvidenceIEA
GeneGbf1Authority309451Mapping file id309451 NCBI fileEvidenceIEA
GeneGolga2Authority64528Mapping file id64528 NCBI fileEvidenceIEA
GeneGolgb1Authority192243Mapping file id192243 NCBI fileEvidenceIEA
GeneGosr1Authority94189Mapping file id94189 NCBI fileEvidenceIEA
GeneGosr2Authority64154Mapping file id64154 NCBI fileEvidenceIEA
GeneGria1Authority50592Mapping file id50592 NCBI fileEvidenceIEA
GeneIns1Authority24505Mapping file id24505 NCBI fileEvidenceIEA
GeneIns2Authority24506Mapping file id24506 NCBI fileEvidenceIEA
GeneKdelr1Authority361577Mapping file id361577 NCBI fileEvidenceIEA
GeneKdelr2Authority304290Mapping file id304290 NCBI fileEvidenceIEA
GeneLman1Authority116666Mapping file id116666 NCBI fileEvidenceIEA
GeneLman1lAuthority300743Mapping file id300743 NCBI fileEvidenceIEA
GeneLman2Authority290994Mapping file id290994 NCBI fileEvidenceIEA
GeneLman2lAuthority301343Mapping file idENSRNOG00000015699 Ensembl fileEvidenceIEA
GeneMcfd2Authority246117Mapping file id246117 NCBI fileEvidenceIEA
GeneMia2Authority100912115Mapping file id100912115 NCBI fileEvidenceIEA
GeneMia3Authority683007Mapping file id683007 NCBI fileEvidenceIEA
GeneNapaAuthority140673Mapping file id140673 NCBI fileEvidenceIEA
GeneNapbAuthority499903Mapping file idENSRNOG00000004753 Ensembl fileEvidenceIEA
GeneNapgAuthority307382Mapping file idENSRNOG00000018914 Ensembl fileEvidenceIEA
GeneNsfAuthority60355Mapping file id60355 NCBI fileEvidenceIEA
GenePpp6cAuthority171121Mapping file id171121 NCBI fileEvidenceIEA
GenePpp6r3Authority309144Mapping file id309144 NCBI fileEvidenceIEA
GenePrebAuthority58842Mapping file id58842 NCBI fileEvidenceIEA
GeneRab1aAuthority81754Mapping file id81754 NCBI fileEvidenceIEA
GeneRab1bAuthority100126191Mapping file idENSRNOG00000070897 Ensembl fileEvidenceIEA
GeneRab1b-ps1Authority361706Mapping file idENSRNOG00000050510 Ensembl fileEvidenceIEA
GeneSar1bAuthority287276Mapping file id287276 NCBI fileEvidenceIEA
GeneScfd1Authority54350Mapping file id54350 NCBI fileEvidenceIEA
GeneSec13Authority297522Mapping file id297522 NCBI fileEvidenceIEA
GeneSec16aAuthority100360302Mapping file id100360302 NCBI fileEvidenceIEA
GeneSec16bAuthority89868Mapping file id89868 NCBI fileEvidenceIEA
GeneSec22aAuthority117513Mapping file id117513 NCBI fileEvidenceIEA
GeneSec22cAuthority687022Mapping file idENSRNOG00000086885 Ensembl fileEvidenceIEA
GeneSec23aAuthority58817Mapping file id58817 NCBI fileEvidenceIEA
GeneSec23ipAuthority309010Mapping file id309010 NCBI fileEvidenceIEA
GeneSec24aAuthority287275Mapping file id287275 NCBI fileEvidenceIEA
GeneSec24bAuthority295461Mapping file id295461 NCBI fileEvidenceIEA
GeneSec24cAuthority685144Mapping file id685144 NCBI fileEvidenceIEA
GeneSec24dAuthority310843Mapping file idENSRNOG00000014872 Ensembl fileEvidenceIEA
GeneSec31aAuthority93646Mapping file id93646 NCBI fileEvidenceIEA
GeneSec31bAuthority309433Mapping file idENSRNOG00000025781 Ensembl fileEvidenceIEA
GeneSerpina1Authority24648Mapping file id24648 NCBI fileEvidenceIEA
GeneSpta1Authority289257Mapping file id289257 NCBI fileEvidenceIEA
GeneSptan1Authority64159Mapping file id64159 NCBI fileEvidenceIEA
GeneSptbAuthority314251Mapping file id314251 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.