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Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Cargo trafficking to the periciliary membrane

R-RNO-5620920 in Reactome release 97: under Assembly of the 9+0 primary cilium, with 66 genes placed in it by the mapping files and 4 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-5620920 (human), R-MMU-5620920 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 66 genes in this rat pathway; showing 1 to 66, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAhrrAuthority498999Mapping file idENSRNOG00000014721 Ensembl fileEvidenceIEA
GeneArf4Authority79120Mapping file id79120 NCBI fileEvidenceIEA
GeneArl13bAuthority304037Mapping file idENSRNOG00000047194 Ensembl fileEvidenceIEA
GeneArl3Authority64664Mapping file id64664 NCBI fileEvidenceIEA
GeneArl6Authority363760Mapping file id363760 NCBI fileEvidenceIEA
GeneAsap1Authority314961Mapping file id314961 NCBI fileEvidenceIEA
GeneAtat1Authority361789Mapping file id361789 NCBI fileEvidenceIEA
GeneBbip1Authority100910342Mapping file id100910342 NCBI fileEvidenceIEA
GeneBbs1Authority309156Mapping file idENSRNOG00000019832 Ensembl fileEvidenceIEA
GeneBbs10Authority500832Mapping file id500832 NCBI fileEvidenceIEA
GeneBbs12Authority365770Mapping file id365770 NCBI fileEvidenceIEA
GeneBbs2Authority113948Mapping file id113948 NCBI fileEvidenceIEA
GeneBbs4Authority300754Mapping file idENSRNOG00000026171 Ensembl fileEvidenceIEA
GeneBbs5Authority362142Mapping file id362142 NCBI fileEvidenceIEA
GeneBbs7Authority361930Mapping file id361930 NCBI fileEvidenceIEA
GeneBbs9Authority315484Mapping file id315484 NCBI fileEvidenceIEA
GeneCct2Authority299809Mapping file id299809 NCBI fileEvidenceIEA
GeneCct3Authority295230Mapping file id295230 NCBI fileEvidenceIEA
GeneCct4Authority29374Mapping file id29374 NCBI fileEvidenceIEA
GeneCct5Authority294864Mapping file id294864 NCBI fileEvidenceIEA
GeneCct8Authority288305Mapping file id288305 NCBI fileEvidenceIEA
GeneCnga2Authority25411Mapping file id25411 NCBI fileEvidenceIEA
GeneCnga4Authority85258Mapping file id85258 NCBI fileEvidenceIEA
GeneCngb1Authority83686Mapping file idENSRNOG00000031773 Ensembl fileEvidenceIEA
GeneExoc1Authority305287Mapping file id305287 NCBI fileEvidenceIEA
GeneExoc2Authority171455Mapping file id171455 NCBI fileEvidenceIEA
GeneExoc3Authority252881Mapping file id252881 NCBI fileEvidenceIEA
GeneExoc4Authority116654Mapping file id116654 NCBI fileEvidenceIEA
GeneExoc5Authority60627Mapping file id60627 NCBI fileEvidenceIEA
GeneExoc6Authority50556Mapping file id50556 NCBI fileEvidenceIEA
GeneExoc7Authority64632Mapping file id64632 NCBI fileEvidenceIEA
GeneExoc8Authority245709Mapping file id245709 NCBI fileEvidenceIEA
GeneGbf1Authority309451Mapping file id309451 NCBI fileEvidenceIEA
GeneInpp5eAuthority114089Mapping file id114089 NCBI fileEvidenceIEA
GeneLztfl1Authority316102Mapping file id316102 NCBI fileEvidenceIEA
GeneMchr1Authority83567Mapping file id83567 NCBI fileEvidenceIEA
GeneMkksAuthority311456Mapping file id311456 NCBI fileEvidenceIEA
GeneNphp3Authority363126Mapping file id363126 NCBI fileEvidenceIEA
GenePde6dAuthority363272Mapping file id363272 NCBI fileEvidenceIEA
GenePkd1Authority24650Mapping file id24650 NCBI fileEvidenceIEA
GeneRab11aAuthority81830Mapping file id81830 NCBI fileEvidenceIEA
GeneRab3ipAuthority29885Mapping file id29885 NCBI fileEvidenceIEA
GeneRab8aAuthority117103Mapping file id117103 NCBI fileEvidenceIEA
GeneRhoAuthority24717Mapping file id24717 NCBI fileEvidenceIEA
GeneRp2Authority367714Mapping file id367714 NCBI fileEvidenceIEA
GeneSmoAuthority25273Mapping file id25273 NCBI fileEvidenceIEA
GeneSstr3Authority171044Mapping file id171044 NCBI fileEvidenceIEA
GeneTcp1Authority24818Mapping file id24818 NCBI fileEvidenceIEA
GeneThoc2lAuthority679894Mapping file id679894 NCBI fileEvidenceIEA
GeneTtc8Authority299246Mapping file id299246 NCBI fileEvidenceIEA
GeneTuba1aAuthority64158Mapping file id64158 NCBI fileEvidenceIEA
GeneTuba1bAuthority500929Mapping file id500929 NCBI fileEvidenceIEA
GeneTuba1cAuthority300218Mapping file id300218 NCBI fileEvidenceIEA
GeneTuba3aAuthority500319Mapping file id500319 NCBI fileEvidenceIEA
GeneTuba3bAuthority500363Mapping file id500363 NCBI fileEvidenceIEA
GeneTuba4aAuthority316531Mapping file id316531 NCBI fileEvidenceIEA
GeneTuba8Authority500377Mapping file id500377 NCBI fileEvidenceIEA
GeneTubal3Authority291287Mapping file idENSRNOG00000028750 Ensembl fileEvidenceIEA
GeneTubb1Authority679312Mapping file id679312 NCBI fileEvidenceIEA
GeneTubb2aAuthority498736Mapping file id498736 NCBI fileEvidenceIEA
GeneTubb2bAuthority291081Mapping file id291081 NCBI fileEvidenceIEA
GeneTubb3Authority246118Mapping file id246118 NCBI fileEvidenceIEA
GeneTubb4aAuthority29213Mapping file id29213 NCBI fileEvidenceIEA
GeneTubb4bAuthority296554Mapping file id296554 NCBI fileEvidenceIEA
GeneTubb6Authority307351Mapping file id307351 NCBI fileEvidenceIEA
GeneUnc119bAuthority288702Mapping file idENSRNOG00000021725 Ensembl fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.