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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Negative regulation of MAPK pathway

R-RNO-5675221 in Reactome release 97: under RAF/MAP kinase cascade, with 44 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-5675221 (human), R-MMU-5675221 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 44 genes in this rat pathway; showing 1 to 44, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneArafAuthority64363Mapping file id64363 NCBI fileEvidenceIEA
GeneBrafAuthority114486Mapping file id114486 NCBI fileEvidenceIEA
GeneBrapAuthority687346Mapping file id687346 NCBI fileEvidenceIEA
GeneDusp1Authority114856Mapping file id114856 NCBI fileEvidenceIEA
GeneDusp10Authority63995Mapping file id63995 NCBI fileEvidenceIEA
GeneDusp16Authority297682Mapping file id297682 NCBI fileEvidenceIEA
GeneDusp2Authority311406Mapping file id311406 NCBI fileEvidenceIEA
GeneDusp4Authority60587Mapping file id60587 NCBI fileEvidenceIEA
GeneDusp5Authority171109Mapping file id171109 NCBI fileEvidenceIEA
GeneDusp6Authority116663Mapping file id116663 NCBI fileEvidenceIEA
GeneDusp7Authority300980Mapping file id300980 NCBI fileEvidenceIEA
GeneDusp8Authority361679Mapping file id361679 NCBI fileEvidenceIEA
GeneDusp9Authority293847Mapping file id293847 NCBI fileEvidenceIEA
GeneHrasAuthority293621Mapping file id293621 NCBI fileEvidenceIEA
GeneKrasAuthority24525Mapping file id24525 NCBI fileEvidenceIEA
GeneKsr1Authority108348076Mapping file idENSRNOG00000012818 Ensembl fileEvidenceIEA
GeneKxd1Authority498606Mapping file idENSRNOG00000019971 Ensembl fileEvidenceIEA
GeneMap2k1Authority170851Mapping file id170851 NCBI fileEvidenceIEA
GeneMap2k2Authority58960Mapping file id58960 NCBI fileEvidenceIEA
GeneMapk1Authority116590Mapping file id116590 NCBI fileEvidenceIEA
GeneMapk12Authority60352Mapping file id60352 NCBI fileEvidenceIEA
GeneMapk3Authority50689Mapping file id50689 NCBI fileEvidenceIEA
GeneMark3Authority170577Mapping file id170577 NCBI fileEvidenceIEA
GeneNrasAuthority24605Mapping file id24605 NCBI fileEvidenceIEA
GenePaqr3Authority305203Mapping file id305203 NCBI fileEvidenceIEA
GenePebp1Authority29542Mapping file id29542 NCBI fileEvidenceIEA
GenePpp2caAuthority24672Mapping file id24672 NCBI fileEvidenceIEA
GenePpp2cbAuthority24673Mapping file id24673 NCBI fileEvidenceIEA
GenePpp2r1aAuthority117281Mapping file id117281 NCBI fileEvidenceIEA
GenePpp2r1bAuthority315648Mapping file id315648 NCBI fileEvidenceIEA
GenePpp2r5aAuthority312754Mapping file id312754 NCBI fileEvidenceIEA
GenePpp2r5bAuthority309179Mapping file id309179 NCBI fileEvidenceIEA
GenePpp2r5cAuthority691318Mapping file idENSRNOG00000004973 Ensembl fileEvidenceIEA
GenePpp2r5dAuthority363193Mapping file id363193 NCBI fileEvidenceIEA
GenePpp2r5eAuthority299147Mapping file id299147 NCBI fileEvidenceIEA
GenePpp5cAuthority65179Mapping file id65179 NCBI fileEvidenceIEA
GenePtpn3Authority362524Mapping file idENSRNOG00000011425 Ensembl fileEvidenceIEA
GenePtpn7Authority246781Mapping file id246781 NCBI fileEvidenceIEA
GeneRaf1Authority24703Mapping file id24703 NCBI fileEvidenceIEA
GeneRps27aAuthority100912032Mapping file id100912032 NCBI fileEvidenceIEA
GeneUba52Authority64156Mapping file id64156 NCBI fileEvidenceIEA
GeneUbbAuthority192255Mapping file id192255 NCBI fileEvidenceIEA
GeneUbcAuthority50522Mapping file id50522 NCBI fileEvidenceIEA
GeneYwhabAuthority56011Mapping file id56011 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.