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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Mitotic Spindle Checkpoint

R-RNO-69618 in Reactome release 97: under Cell Cycle Checkpoints, with 108 genes placed in it by the mapping files and 2 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-69618 (human), R-MMU-69618 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 108 genes in this rat pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 2
GeneAhctf1Authority360886Mapping file idENSRNOG00000023541 Ensembl fileEvidenceIEA
GeneAnapc1Authority311412Mapping file idENSRNOG00000016965 Ensembl fileEvidenceIEA
GeneAnapc10Authority361389Mapping file id361389 NCBI fileEvidenceIEA
GeneAnapc15Authority293155Mapping file id293155 NCBI fileEvidenceIEA
GeneAnapc16Authority100360936Mapping file idENSRNOG00000000576 Ensembl fileEvidenceIEA
GeneAnapc2Authority296558Mapping file idENSRNOG00000011295 Ensembl fileEvidenceIEA
GeneAnapc4Authority305420Mapping file id305420 NCBI fileEvidenceIEA
GeneAnapc5Authority288671Mapping file id288671 NCBI fileEvidenceIEA
GeneAnapc7Authority304490Mapping file idENSRNOG00000001283 Ensembl fileEvidenceIEA
GeneAurkbAuthority114592Mapping file id114592 NCBI fileEvidenceIEA
GeneB9d2Authority308443Mapping file id308443 NCBI fileEvidenceIEA
GeneBirc5Authority64041Mapping file id64041 NCBI fileEvidenceIEA
GeneBub1Authority296137Mapping file id296137 NCBI fileEvidenceIEA
GeneBub1bAuthority171576Mapping file idENSRNOG00000007906 Ensembl fileEvidenceIEA
GeneCdc16Authority290875Mapping file id290875 NCBI fileEvidenceIEA
GeneCdc20Authority64515Mapping file id64515 NCBI fileEvidenceIEA
GeneCdc23Authority291689Mapping file idENSRNOG00000024241 Ensembl fileEvidenceIEA
GeneCdc26Authority366381Mapping file id366381 NCBI fileEvidenceIEA
GeneCdc27Authority360643Mapping file id360643 NCBI fileEvidenceIEA
GeneCdca8Authority500545Mapping file id500545 NCBI fileEvidenceIEA
GeneCenpaAuthority298850Mapping file id298850 NCBI fileEvidenceIEA
GeneCenpcAuthority305270Mapping file id305270 NCBI fileEvidenceIEA
GeneCenpeAuthority362044Mapping file idENSRNOG00000009339 Ensembl fileEvidenceIEA
GeneCenpfAuthority257649Mapping file id257649 NCBI fileEvidenceIEA
GeneCenphAuthority681185Mapping file id681185 NCBI fileEvidenceIEA
GeneCenpiAuthority25448Mapping file id25448 NCBI fileEvidenceIEA
GeneCenpkAuthority294712Mapping file idENSRNOG00000039740 Ensembl fileEvidenceIEA
GeneCenplAuthority289150Mapping file id289150 NCBI fileEvidenceIEA
GeneCenpmAuthority315164Mapping file id315164 NCBI fileEvidenceIEA
GeneCenpnAuthority361416Mapping file id361416 NCBI fileEvidenceIEA
GeneCenpoAuthority684439Mapping file id684439 NCBI fileEvidenceIEA
GeneCenppAuthority679342Mapping file id679342 NCBI fileEvidenceIEA
GeneCenpqAuthority363198Mapping file id363198 NCBI fileEvidenceIEA
GeneCenptAuthority307805Mapping file id307805 NCBI fileEvidenceIEA
GeneCenpuAuthority306464Mapping file id306464 NCBI fileEvidenceIEA
GeneCkap5Authority311191Mapping file id311191 NCBI fileEvidenceIEA
GeneClasp1Authority304740Mapping file idENSRNOG00000002376 Ensembl fileEvidenceIEA
GeneClasp2Authority114514Mapping file id114514 NCBI fileEvidenceIEA
GeneClip1Authority65201Mapping file id65201 NCBI fileEvidenceIEA
GeneDsn1Authority499933Mapping file idENSRNOG00000006236 Ensembl fileEvidenceIEA
GeneDync1h1Authority29489Mapping file id29489 NCBI fileEvidenceIEA
GeneDync1i1Authority29564Mapping file id29564 NCBI fileEvidenceIEA
GeneDync1i2Authority116659Mapping file idENSRNOG00000009781 Ensembl fileEvidenceIEA
GeneDync1li1Authority252902Mapping file id252902 NCBI fileEvidenceIEA
GeneDync1li2Authority81655Mapping file id81655 NCBI fileEvidenceIEA
GeneDynll1Authority58945Mapping file id58945 NCBI fileEvidenceIEA
GeneDynll2Authority140734Mapping file id140734 NCBI fileEvidenceIEA
GeneErcc6lAuthority317252Mapping file id317252 NCBI fileEvidenceIEA
GeneIncenpAuthority293733Mapping file idENSRNOG00000032929 Ensembl fileEvidenceIEA
GeneItgb3bpAuthority362548Mapping file id362548 NCBI fileEvidenceIEA
GeneKif18aAuthority362186Mapping file idENSRNOG00000005037 Ensembl fileEvidenceIEA
GeneKif2aAuthority84391Mapping file idENSRNOG00000014000 Ensembl fileEvidenceIEA
GeneKif2bAuthority287624Mapping file id287624 NCBI fileEvidenceIEA
GeneKif2cAuthority171529Mapping file idENSRNOG00000019100 Ensembl fileEvidenceIEA
GeneKnl1Authority311327Mapping file idENSRNOG00000060100 Ensembl fileEvidenceIEA
GeneKntc1Authority304477Mapping file id304477 NCBI fileEvidenceIEA
GeneLOC148007825Authority148007825Mapping file idENSRNOG00000020446 Ensembl fileEvidenceIEA
GeneMad1l1Authority680006Mapping file idENSRNOG00000001265 Ensembl fileEvidenceIEA
GeneMad2l1Authority297176Mapping file id297176 NCBI fileEvidenceIEA
GeneMapre1Authority114764Mapping file id114764 NCBI fileEvidenceIEA
GeneMis12Authority501706Mapping file idENSRNOG00000066036 Ensembl fileEvidenceIEA
GeneNdc80Authority301701Mapping file idENSRNOG00000013727 Ensembl fileEvidenceIEA
GeneNde1Authority83836Mapping file id83836 NCBI fileEvidenceIEA
GeneNdel1Authority170845Mapping file id170845 NCBI fileEvidenceIEA
GeneNudcAuthority29648Mapping file id29648 NCBI fileEvidenceIEA
GeneNuf2Authority304951Mapping file id304951 NCBI fileEvidenceIEA
GeneNup107Authority116555Mapping file idENSRNOG00000006541 Ensembl fileEvidenceIEA
GeneNup133Authority292085Mapping file id292085 NCBI fileEvidenceIEA
GeneNup160Authority311182Mapping file idENSRNOG00000028215 Ensembl fileEvidenceIEA
GeneNup37Authority299706Mapping file idENSRNOG00000004727 Ensembl fileEvidenceIEA
GeneNup43Authority683983Mapping file id683983 NCBI fileEvidenceIEA
GeneNup85Authority287830Mapping file id287830 NCBI fileEvidenceIEA
GeneNup98Authority81738Mapping file id81738 NCBI fileEvidenceIEA
GenePafah1b1Authority83572Mapping file id83572 NCBI fileEvidenceIEA
GenePlk1Authority25515Mapping file id25515 NCBI fileEvidenceIEA
GenePmf1Authority681050Mapping file id681050 NCBI fileEvidenceIEA
GenePpp1ccAuthority24669Mapping file id24669 NCBI fileEvidenceIEA
GenePpp2caAuthority24672Mapping file id24672 NCBI fileEvidenceIEA
GenePpp2cbAuthority24673Mapping file id24673 NCBI fileEvidenceIEA
GenePpp2r1aAuthority117281Mapping file id117281 NCBI fileEvidenceIEA
GenePpp2r1bAuthority315648Mapping file id315648 NCBI fileEvidenceIEA
GenePpp2r5aAuthority312754Mapping file id312754 NCBI fileEvidenceIEA
GenePpp2r5bAuthority309179Mapping file id309179 NCBI fileEvidenceIEA
GenePpp2r5cAuthority691318Mapping file idENSRNOG00000004973 Ensembl fileEvidenceIEA
GenePpp2r5dAuthority363193Mapping file id363193 NCBI fileEvidenceIEA
GenePpp2r5eAuthority299147Mapping file id299147 NCBI fileEvidenceIEA
GeneRanbp2Authority294429Mapping file id294429 NCBI fileEvidenceIEA
GeneRangap1Authority362965Mapping file idENSRNOG00000031789 Ensembl fileEvidenceIEA
GeneRcc2Authority298594Mapping file id298594 NCBI fileEvidenceIEA
GeneRps27Authority94266Mapping file id94266 NCBI fileEvidenceIEA
GeneSec13Authority297522Mapping file id297522 NCBI fileEvidenceIEA
GeneSgo1Authority363174Mapping file id363174 NCBI fileEvidenceIEA
GeneSgo2Authority316425Mapping file idENSRNOG00000027035 Ensembl fileEvidenceIEA
GeneSka1Authority291441Mapping file id291441 NCBI fileEvidenceIEA
GeneSka2Authority287598Mapping file id287598 NCBI fileEvidenceIEA
GeneSka2l1Authority102555739Mapping file id102555739 NCBI fileEvidenceIEA
GeneSpc24Authority363028Mapping file id363028 NCBI fileEvidenceIEA
GeneSpc25Authority295661Mapping file id295661 NCBI fileEvidenceIEA
GeneSpdl1Authority303037Mapping file id303037 NCBI fileEvidenceIEA
GeneTaok1Authority286993Mapping file id286993 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.