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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Cyclin A:Cdk2-associated events at S phase entry

R-RNO-69656 in Reactome release 97: under S Phase, with 61 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-69656 (human), R-MMU-69656 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 61 genes in this rat pathway; showing 1 to 61, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAdrm1Authority65138Mapping file id65138 NCBI fileEvidenceIEA
GeneAkt1Authority24185Mapping file id24185 NCBI fileEvidenceIEA
GeneAkt2Authority25233Mapping file id25233 NCBI fileEvidenceIEA
GeneAkt3Authority29414Mapping file id29414 NCBI fileEvidenceIEA
GeneCables1Authority307585Mapping file id307585 NCBI fileEvidenceIEA
GeneCcna1Authority295052Mapping file id295052 NCBI fileEvidenceIEA
GeneCcna2Authority114494Mapping file id114494 NCBI fileEvidenceIEA
GeneCcnd1Authority58919Mapping file id58919 NCBI fileEvidenceIEA
GeneCcne1Authority25729Mapping file idENSRNOG00000014786 Ensembl fileEvidenceIEA
GeneCcne2Authority362485Mapping file id362485 NCBI fileEvidenceIEA
GeneCcnhAuthority84389Mapping file id84389 NCBI fileEvidenceIEA
GeneCdc25aAuthority171102Mapping file id171102 NCBI fileEvidenceIEA
GeneCdc25bAuthority171103Mapping file id171103 NCBI fileEvidenceIEA
GeneCdk2Authority362817Mapping file idENSRNOG00000006469 Ensembl fileEvidenceIEA
GeneCdk4Authority94201Mapping file id94201 NCBI fileEvidenceIEA
GeneCdk7Authority171150Mapping file idENSRNOG00000018510 Ensembl fileEvidenceIEA
GeneCdkn1aAuthority114851Mapping file idENSRNOG00000000521 Ensembl fileEvidenceIEA
GeneCdkn1bAuthority83571Mapping file id83571 NCBI fileEvidenceIEA
GeneCks1bAuthority499655Mapping file id499655 NCBI fileEvidenceIEA
GeneCul1Authority362356Mapping file idENSRNOG00000005310 Ensembl fileEvidenceIEA
GeneFzr1Authority314642Mapping file idENSRNOG00000004169 Ensembl fileEvidenceIEA
GeneKxd1Authority498606Mapping file idENSRNOG00000019971 Ensembl fileEvidenceIEA
GeneMnat1Authority266713Mapping file id266713 NCBI fileEvidenceIEA
GenePsma1Authority29668Mapping file id29668 NCBI fileEvidenceIEA
GenePsma2Authority29669Mapping file id29669 NCBI fileEvidenceIEA
GenePsma3Authority29670Mapping file id29670 NCBI fileEvidenceIEA
GenePsma4Authority29671Mapping file id29671 NCBI fileEvidenceIEA
GenePsma5Authority29672Mapping file idENSRNOG00000019868 Ensembl fileEvidenceIEA
GenePsma6Authority29673Mapping file id29673 NCBI fileEvidenceIEA
GenePsma7Authority29674Mapping file idENSRNOG00000056853 Ensembl fileEvidenceIEA
GenePsmb1Authority94198Mapping file id94198 NCBI fileEvidenceIEA
GenePsmb2Authority29675Mapping file id29675 NCBI fileEvidenceIEA
GenePsmb3Authority29676Mapping file id29676 NCBI fileEvidenceIEA
GenePsmb5Authority29425Mapping file id29425 NCBI fileEvidenceIEA
GenePsmb6Authority29666Mapping file id29666 NCBI fileEvidenceIEA
GenePsmb6l1Authority100360846Mapping file id100360846 NCBI fileEvidenceIEA
GenePsmb7Authority85492Mapping file id85492 NCBI fileEvidenceIEA
GenePsmc1Authority117263Mapping file id117263 NCBI fileEvidenceIEA
GenePsmc2Authority25581Mapping file id25581 NCBI fileEvidenceIEA
GenePsmc3Authority29677Mapping file id29677 NCBI fileEvidenceIEA
GenePsmc4Authority117262Mapping file id117262 NCBI fileEvidenceIEA
GenePsmc5Authority81827Mapping file id81827 NCBI fileEvidenceIEA
GenePsmd1Authority83806Mapping file id83806 NCBI fileEvidenceIEA
GenePsmd11Authority303353Mapping file id303353 NCBI fileEvidenceIEA
GenePsmd12Authority287772Mapping file id287772 NCBI fileEvidenceIEA
GenePsmd13Authority365388Mapping file id365388 NCBI fileEvidenceIEA
GenePsmd14Authority311078Mapping file id311078 NCBI fileEvidenceIEA
GenePsmd2Authority287984Mapping file id287984 NCBI fileEvidenceIEA
GenePsmd3Authority287670Mapping file idENSRNOG00000028103 Ensembl fileEvidenceIEA
GenePsmd6Authority289924Mapping file idENSRNOG00000006751 Ensembl fileEvidenceIEA
GenePsmd7Authority307821Mapping file idENSRNOG00000014097 Ensembl fileEvidenceIEA
GenePsmd8Authority292766Mapping file id292766 NCBI fileEvidenceIEA
GenePtk6Authority366275Mapping file id366275 NCBI fileEvidenceIEA
GeneRb1Authority24708Mapping file id24708 NCBI fileEvidenceIEA
GeneRps27aAuthority100912032Mapping file id100912032 NCBI fileEvidenceIEA
GeneSkp1Authority287280Mapping file id287280 NCBI fileEvidenceIEA
GeneSkp2Authority294790Mapping file id294790 NCBI fileEvidenceIEA
GeneUba52Authority64156Mapping file id64156 NCBI fileEvidenceIEA
GeneUbbAuthority192255Mapping file id192255 NCBI fileEvidenceIEA
GeneUbcAuthority50522Mapping file id50522 NCBI fileEvidenceIEA
GeneWee1Authority308937Mapping file id308937 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.