Skip to content
Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

RNA Polymerase III Transcription Initiation

R-RNO-76046 in Reactome release 97: under RNA Polymerase III Transcription, with 31 genes placed in it by the mapping files and 3 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-76046 (human), R-MMU-76046 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 31 genes in this rat pathway; showing 1 to 31, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneBdp1Authority294687Mapping file id294687 NCBI fileEvidenceIEA
GeneBrf1Authority299347Mapping file idENSRNOG00000014595 Ensembl fileEvidenceIEA
GeneBrf2Authority306542Mapping file id306542 NCBI fileEvidenceIEA
GeneCrcpAuthority114205Mapping file id114205 NCBI fileEvidenceIEA
GeneGtf3aAuthority246299Mapping file id246299 NCBI fileEvidenceIEA
GeneGtf3c1Authority171063Mapping file idENSRNOG00000016218 Ensembl fileEvidenceIEA
GeneGtf3c2Authority313914Mapping file id313914 NCBI fileEvidenceIEA
GeneGtf3c3Authority316810Mapping file id316810 NCBI fileEvidenceIEA
GeneGtf3c4Authority685539Mapping file id685539 NCBI fileEvidenceIEA
GeneGtf3c5Authority362095Mapping file id362095 NCBI fileEvidenceIEA
GeneGtf3c6Authority361858Mapping file idENSRNOG00000000586 Ensembl fileEvidenceIEA
GenePolr1cAuthority301246Mapping file id301246 NCBI fileEvidenceIEA
GenePolr2eAuthority690966Mapping file id690966 NCBI fileEvidenceIEA
GenePolr2fAuthority83503Mapping file id83503 NCBI fileEvidenceIEA
GenePolr2hAuthority498109Mapping file id498109 NCBI fileEvidenceIEA
GenePolr2h-ps1Authority287988Mapping file idENSRNOG00000032442 Ensembl fileEvidenceIEA
GenePolr3aAuthority361102Mapping file id361102 NCBI fileEvidenceIEA
GenePolr3bAuthority362858Mapping file idENSRNOG00000007432 Ensembl fileEvidenceIEA
GenePolr3cAuthority310685Mapping file id310685 NCBI fileEvidenceIEA
GenePolr3dAuthority306012Mapping file id306012 NCBI fileEvidenceIEA
GenePolr3eAuthority361640Mapping file idENSRNOG00000016960 Ensembl fileEvidenceIEA
GenePolr3fAuthority311487Mapping file id311487 NCBI fileEvidenceIEA
GenePolr3gAuthority685465Mapping file id685465 NCBI fileEvidenceIEA
GenePolr3glAuthority690254Mapping file id690254 NCBI fileEvidenceIEA
GenePolr3hAuthority300088Mapping file idENSRNOG00000004471 Ensembl fileEvidenceIEA
GenePou2f1Authority171068Mapping file id171068 NCBI fileEvidenceIEA
GeneSnapc1Authority314228Mapping file idENSRNOG00000009296 Ensembl fileEvidenceIEA
GeneSnapc2Authority304204Mapping file id304204 NCBI fileEvidenceIEA
GeneSnapc3Authority362537Mapping file id362537 NCBI fileEvidenceIEA
GeneSnapc4Authority362088Mapping file idENSRNOG00000018845 Ensembl fileEvidenceIEA
GeneTbpAuthority117526Mapping file id117526 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.