Skip to content

Create an account and get up to 25% off.

Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

RHOG GTPase cycle

R-RNO-9013408 in Reactome release 97: under RHO GTPase cycle, with 68 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9013408 (human), R-MMU-9013408 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 68 genes in this rat pathway; showing 1 to 68, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAnkle2Authority360829Mapping file idENSRNOG00000060144 Ensembl fileEvidenceIEA
GeneArfgap3Authority503165Mapping file id503165 NCBI fileEvidenceIEA
GeneArhgap1Authority311193Mapping file idENSRNOG00000016610 Ensembl fileEvidenceIEA
GeneArhgap21Authority307178Mapping file idENSRNOG00000008659 Ensembl fileEvidenceIEA
GeneArhgap32Authority315530Mapping file idENSRNOG00000008709 Ensembl fileEvidenceIEA
GeneArhgap35Authority306400Mapping file id306400 NCBI fileEvidenceIEA
GeneArhgap5Authority299012Mapping file id299012 NCBI fileEvidenceIEA
GeneArhgdiaAuthority360678Mapping file id360678 NCBI fileEvidenceIEA
GeneArhgdibAuthority362456Mapping file id362456 NCBI fileEvidenceIEA
GeneArhgdigAuthority360500Mapping file id360500 NCBI fileEvidenceIEA
GeneArhgef16Authority687105Mapping file id687105 NCBI fileEvidenceIEA
GeneArhgef26Authority310460Mapping file id310460 NCBI fileEvidenceIEA
GeneArhgef5Authority140898Mapping file id140898 NCBI fileEvidenceIEA
GeneCdc42Authority64465Mapping file id64465 NCBI fileEvidenceIEA
GeneCdc42ep1Authority315121Mapping file id315121 NCBI fileEvidenceIEA
GeneCyfip1Authority308666Mapping file id308666 NCBI fileEvidenceIEA
GeneDepdc1bAuthority310074Mapping file id310074 NCBI fileEvidenceIEA
GeneDiaph3Authority290396Mapping file id290396 NCBI fileEvidenceIEA
GeneDock2Authority360509Mapping file id360509 NCBI fileEvidenceIEA
GeneDock3Authority315992Mapping file id315992 NCBI fileEvidenceIEA
GeneDock4Authority366608Mapping file id366608 NCBI fileEvidenceIEA
GeneDock5Authority305987Mapping file id305987 NCBI fileEvidenceIEA
GeneDsg2Authority307562Mapping file id307562 NCBI fileEvidenceIEA
GeneElmo2Authority362271Mapping file id362271 NCBI fileEvidenceIEA
GeneEmdAuthority25437Mapping file id25437 NCBI fileEvidenceIEA
GeneEpha2Authority366492Mapping file id366492 NCBI fileEvidenceIEA
GeneEsyt1Authority29579Mapping file id29579 NCBI fileEvidenceIEA
GeneGarre1Authority308509Mapping file id308509 NCBI fileEvidenceIEA
GeneIqgap2Authority100360623Mapping file id100360623 NCBI fileEvidenceIEA
GeneItgb1Authority24511Mapping file id24511 NCBI fileEvidenceIEA
GeneItsn1Authority29491Mapping file id29491 NCBI fileEvidenceIEA
GeneKalrnAuthority84009Mapping file id84009 NCBI fileEvidenceIEA
GeneKtn1Authority361029Mapping file id361029 NCBI fileEvidenceIEA
GeneLamtor1Authority308869Mapping file id308869 NCBI fileEvidenceIEA
GeneLamtor1l1Authority100361543Mapping file idENSRNOG00000004319 Ensembl fileEvidenceIEA
GeneLbrAuthority89789Mapping file idENSRNOG00000052574 Ensembl fileEvidenceIEA
GeneLetm1Authority305457Mapping file id305457 NCBI fileEvidenceIEA
GeneLman1Authority116666Mapping file id116666 NCBI fileEvidenceIEA
GeneMap3k11Authority309168Mapping file id309168 NCBI fileEvidenceIEA
GeneMcamAuthority78967Mapping file id78967 NCBI fileEvidenceIEA
GeneMcf2Authority317598Mapping file id317598 NCBI fileEvidenceIEA
GeneMcf2lAuthority117020Mapping file id117020 NCBI fileEvidenceIEA
GeneMpp7Authority307035Mapping file id307035 NCBI fileEvidenceIEA
GeneNdufa5Authority25488Mapping file id25488 NCBI fileEvidenceIEA
GeneNdufs3Authority295923Mapping file idENSRNOG00000009155 Ensembl fileEvidenceIEA
GeneOphn1Authority312108Mapping file id312108 NCBI fileEvidenceIEA
GenePak2Authority29432Mapping file id29432 NCBI fileEvidenceIEA
GenePak4Authority292756Mapping file id292756 NCBI fileEvidenceIEA
GenePgrmc2Authority361940Mapping file id361940 NCBI fileEvidenceIEA
GenePik3r1Authority25513Mapping file id25513 NCBI fileEvidenceIEA
GenePld1Authority25096Mapping file id25096 NCBI fileEvidenceIEA
GenePlekhg3Authority314249Mapping file id314249 NCBI fileEvidenceIEA
GenePrex1Authority311647Mapping file id311647 NCBI fileEvidenceIEA
GeneRab7aAuthority29448Mapping file id29448 NCBI fileEvidenceIEA
GeneRhogAuthority308875Mapping file id308875 NCBI fileEvidenceIEA
GeneShmt2Authority299857Mapping file id299857 NCBI fileEvidenceIEA
GeneStbd1Authority305234Mapping file id305234 NCBI fileEvidenceIEA
GeneStx5Authority65134Mapping file id65134 NCBI fileEvidenceIEA
GeneTfrcAuthority64678Mapping file id64678 NCBI fileEvidenceIEA
GeneTrioAuthority310192Mapping file id310192 NCBI fileEvidenceIEA
GeneVamp3Authority29528Mapping file id29528 NCBI fileEvidenceIEA
GeneVangl1Authority690366Mapping file idENSRNOG00000016477 Ensembl fileEvidenceIEA
GeneVapbAuthority60431Mapping file id60431 NCBI fileEvidenceIEA
GeneVav1Authority25156Mapping file idENSRNOG00000050430 Ensembl fileEvidenceIEA
GeneVav2Authority296603Mapping file idENSRNOG00000007422 Ensembl fileEvidenceIEA
GeneVav3Authority295378Mapping file id295378 NCBI fileEvidenceIEA
GeneVrk2Authority360991Mapping file idENSRNOG00000007864 Ensembl fileEvidenceIEA
GeneYkt6Authority64351Mapping file id64351 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.