Pathway Rat Rattus norvegicus
Read this first
Signaling by Rho GTPases, Miro GTPases and RHOBTB3
R-RNO-9716542 in Reactome release 97: under Signal Transduction, with 629 genes placed in it by the mapping files and 3 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9716542 (human), R-MMU-9716542 (mouse). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists.
[R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments.
[R11]
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this rat pathway
The mapping files place 629 genes in this rat pathway; showing 101 to 200, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneBcr | Authority309696 | Mapping file id309696 NCBI file | EvidenceIEA |
| GeneBirc5 | Authority64041 | Mapping file id64041 NCBI file | EvidenceIEA |
| GeneBltp3b | Authority363009 | Mapping file id363009 NCBI file | EvidenceIEA |
| GeneBrk1 | Authority679934 | Mapping file id679934 NCBI file | EvidenceIEA |
| GeneBtk | Authority367901 | Mapping file id367901 NCBI file | EvidenceIEA |
| GeneBub1 | Authority296137 | Mapping file id296137 NCBI file | EvidenceIEA |
| GeneBub1b | Authority171576 | Mapping file idENSRNOG00000007906 Ensembl file | EvidenceIEA |
| GeneC1qbp | Authority29681 | Mapping file id29681 NCBI file | EvidenceIEA |
| GeneCalm1 | Authority24242 | Mapping file idENSRNOG00000072513 Ensembl file | EvidenceIEA |
| GeneCalm2 | Authority50663 | Mapping file idENSRNOG00000067086 Ensembl file | EvidenceIEA |
| GeneCalm3 | Authority24244 | Mapping file id24244 NCBI file | EvidenceIEA |
| GeneCavin1 | Authority287710 | Mapping file idENSRNOG00000019778 Ensembl file | EvidenceIEA |
| GeneCcdc187 | Authority499759 | Mapping file idENSRNOG00000027392 Ensembl file | EvidenceIEA |
| GeneCcdc88a | Authority305605 | Mapping file id305605 NCBI file | EvidenceIEA |
| GeneCcne1 | Authority25729 | Mapping file idENSRNOG00000014786 Ensembl file | EvidenceIEA |
| GeneCcp110 | Authority361634 | Mapping file idENSRNOG00000027405 Ensembl file | EvidenceIEA |
| GeneCct2 | Authority299809 | Mapping file id299809 NCBI file | EvidenceIEA |
| GeneCct6a | Authority288620 | Mapping file idENSRNOG00000000923 Ensembl file | EvidenceIEA |
| GeneCct7 | Authority297406 | Mapping file id297406 NCBI file | EvidenceIEA |
| GeneCdc20 | Authority64515 | Mapping file id64515 NCBI file | EvidenceIEA |
| GeneCdc25c | Authority307511 | Mapping file id307511 NCBI file | EvidenceIEA |
| GeneCdc37 | Authority114562 | Mapping file id114562 NCBI file | EvidenceIEA |
| GeneCdc42 | Authority64465 | Mapping file id64465 NCBI file | EvidenceIEA |
| GeneCdc42bpa | Authority114116 | Mapping file id114116 NCBI file | EvidenceIEA |
| GeneCdc42bpb | Authority113960 | Mapping file id113960 NCBI file | EvidenceIEA |
| GeneCdc42ep1 | Authority315121 | Mapping file id315121 NCBI file | EvidenceIEA |
| GeneCdc42ep2 | Authority309175 | Mapping file id309175 NCBI file | EvidenceIEA |
| GeneCdc42ep3 | Authority313838 | Mapping file id313838 NCBI file | EvidenceIEA |
| GeneCdc42ep4 | Authority303653 | Mapping file id303653 NCBI file | EvidenceIEA |
| GeneCdca8 | Authority500545 | Mapping file id500545 NCBI file | EvidenceIEA |
| GeneCdh1 | Authority83502 | Mapping file id83502 NCBI file | EvidenceIEA |
| GeneCenpa | Authority298850 | Mapping file id298850 NCBI file | EvidenceIEA |
| GeneCenpc | Authority305270 | Mapping file id305270 NCBI file | EvidenceIEA |
| GeneCenpe | Authority362044 | Mapping file idENSRNOG00000009339 Ensembl file | EvidenceIEA |
| GeneCenpf | Authority257649 | Mapping file id257649 NCBI file | EvidenceIEA |
| GeneCenph | Authority681185 | Mapping file id681185 NCBI file | EvidenceIEA |
| GeneCenpi | Authority25448 | Mapping file id25448 NCBI file | EvidenceIEA |
| GeneCenpk | Authority294712 | Mapping file idENSRNOG00000039740 Ensembl file | EvidenceIEA |
| GeneCenpl | Authority289150 | Mapping file id289150 NCBI file | EvidenceIEA |
| GeneCenpm | Authority315164 | Mapping file id315164 NCBI file | EvidenceIEA |
| GeneCenpn | Authority361416 | Mapping file id361416 NCBI file | EvidenceIEA |
| GeneCenpo | Authority684439 | Mapping file id684439 NCBI file | EvidenceIEA |
| GeneCenpp | Authority679342 | Mapping file id679342 NCBI file | EvidenceIEA |
| GeneCenpq | Authority363198 | Mapping file id363198 NCBI file | EvidenceIEA |
| GeneCenpt | Authority307805 | Mapping file id307805 NCBI file | EvidenceIEA |
| GeneCenpu | Authority306464 | Mapping file id306464 NCBI file | EvidenceIEA |
| GeneCep97 | Authority304007 | Mapping file id304007 NCBI file | EvidenceIEA |
| GeneCftr | Authority24255 | Mapping file id24255 NCBI file | EvidenceIEA |
| GeneChn2 | Authority84031 | Mapping file id84031 NCBI file | EvidenceIEA |
| GeneCit | Authority83620 | Mapping file id83620 NCBI file | EvidenceIEA |
| GeneCkap4 | Authority362859 | Mapping file id362859 NCBI file | EvidenceIEA |
| GeneCkap5 | Authority311191 | Mapping file id311191 NCBI file | EvidenceIEA |
| GeneCkb | Authority24264 | Mapping file id24264 NCBI file | EvidenceIEA |
| GeneClasp1 | Authority304740 | Mapping file idENSRNOG00000002376 Ensembl file | EvidenceIEA |
| GeneClasp2 | Authority114514 | Mapping file id114514 NCBI file | EvidenceIEA |
| GeneClip1 | Authority65201 | Mapping file id65201 NCBI file | EvidenceIEA |
| GeneCltc | Authority54241 | Mapping file id54241 NCBI file | EvidenceIEA |
| GeneCops2 | Authority261736 | Mapping file id261736 NCBI file | EvidenceIEA |
| GeneCops4 | Authority360915 | Mapping file id360915 NCBI file | EvidenceIEA |
| GeneCpd | Authority25306 | Mapping file id25306 NCBI file | EvidenceIEA |
| GeneCpne8 | Authority362988 | Mapping file id362988 NCBI file | EvidenceIEA |
| GeneCpsf7 | Authority365407 | Mapping file id365407 NCBI file | EvidenceIEA |
| GeneCsk | Authority315707 | Mapping file id315707 NCBI file | EvidenceIEA |
| GeneCtnna1 | Authority307505 | Mapping file idENSRNOG00000005796 Ensembl file | EvidenceIEA |
| GeneCtnnb1 | Authority84353 | Mapping file id84353 NCBI file | EvidenceIEA |
| GeneCul3 | Authority301555 | Mapping file id301555 NCBI file | EvidenceIEA |
| GeneCyba | Authority79129 | Mapping file id79129 NCBI file | EvidenceIEA |
| GeneCybb | Authority66021 | Mapping file id66021 NCBI file | EvidenceIEA |
| GeneCyfip1 | Authority308666 | Mapping file id308666 NCBI file | EvidenceIEA |
| GeneCyfip2 | Authority303073 | Mapping file idENSRNOG00000006557 Ensembl file | EvidenceIEA |
| GeneDaam1 | Authority314212 | Mapping file id314212 NCBI file | EvidenceIEA |
| GeneDbt | Authority29611 | Mapping file id29611 NCBI file | EvidenceIEA |
| GeneDdrgk1 | Authority296162 | Mapping file id296162 NCBI file | EvidenceIEA |
| GeneDdx39b | Authority114612 | Mapping file id114612 NCBI file | EvidenceIEA |
| GeneDdx4 | Authority310090 | Mapping file id310090 NCBI file | EvidenceIEA |
| GeneDef6 | Authority309642 | Mapping file idENSRNOG00000000502 Ensembl file | EvidenceIEA |
| GeneDepdc1b | Authority310074 | Mapping file id310074 NCBI file | EvidenceIEA |
| GeneDiaph1 | Authority307483 | Mapping file idENSRNOG00000019688 Ensembl file | EvidenceIEA |
| GeneDiaph3 | Authority290396 | Mapping file id290396 NCBI file | EvidenceIEA |
| GeneDlc1 | Authority58834 | Mapping file idENSRNOG00000010780 Ensembl file | EvidenceIEA |
| GeneDlg4 | Authority29495 | Mapping file id29495 NCBI file | EvidenceIEA |
| GeneDlg5 | Authority305645 | Mapping file id305645 NCBI file | EvidenceIEA |
| GeneDnmbp | Authority309362 | Mapping file id309362 NCBI file | EvidenceIEA |
| GeneDock10 | Authority301556 | Mapping file idENSRNOG00000053200 Ensembl file | EvidenceIEA |
| GeneDock11 | Authority313438 | Mapping file id313438 NCBI file | EvidenceIEA |
| GeneDock2 | Authority360509 | Mapping file id360509 NCBI file | EvidenceIEA |
| GeneDock3 | Authority315992 | Mapping file id315992 NCBI file | EvidenceIEA |
| GeneDock4 | Authority366608 | Mapping file id366608 NCBI file | EvidenceIEA |
| GeneDock5 | Authority305987 | Mapping file id305987 NCBI file | EvidenceIEA |
| GeneDock6 | Authority367039 | Mapping file idENSRNOG00000010652 Ensembl file | EvidenceIEA |
| GeneDock7 | Authority313388 | Mapping file id313388 NCBI file | EvidenceIEA |
| GeneDock8 | Authority499337 | Mapping file idENSRNOG00000015894 Ensembl file | EvidenceIEA |
| GeneDsg1 | Authority291755 | Mapping file id291755 NCBI file | EvidenceIEA |
| GeneDsg2 | Authority307562 | Mapping file id307562 NCBI file | EvidenceIEA |
| GeneDsn1 | Authority499933 | Mapping file idENSRNOG00000006236 Ensembl file | EvidenceIEA |
| GeneDsp | Authority306871 | Mapping file id306871 NCBI file | EvidenceIEA |
| GeneDst | Authority316313 | Mapping file idENSRNOG00000012207 Ensembl file | EvidenceIEA |
| GeneDvl1 | Authority83721 | Mapping file id83721 NCBI file | EvidenceIEA |
| GeneDvl2 | Authority303251 | Mapping file id303251 NCBI file | EvidenceIEA |
| GeneDvl3 | Authority303811 | Mapping file id303811 NCBI file | EvidenceIEA |
Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.
- Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.