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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Signaling by Rho GTPases, Miro GTPases and RHOBTB3

R-RNO-9716542 in Reactome release 97: under Signal Transduction, with 629 genes placed in it by the mapping files and 3 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9716542 (human), R-MMU-9716542 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 629 genes in this rat pathway; showing 601 to 629, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 7 of 7
GeneVav1Authority25156Mapping file idENSRNOG00000050430 Ensembl fileEvidenceIEA
GeneVav2Authority296603Mapping file idENSRNOG00000007422 Ensembl fileEvidenceIEA
GeneVav3Authority295378Mapping file id295378 NCBI fileEvidenceIEA
GeneVcpAuthority116643Mapping file id116643 NCBI fileEvidenceIEA
GeneVhlAuthority24874Mapping file id24874 NCBI fileEvidenceIEA
GeneVimAuthority81818Mapping file id81818 NCBI fileEvidenceIEA
GeneVma22Authority363213Mapping file id363213 NCBI fileEvidenceIEA
GeneVrk2Authority360991Mapping file idENSRNOG00000007864 Ensembl fileEvidenceIEA
GeneWasf1Authority294568Mapping file id294568 NCBI fileEvidenceIEA
GeneWasf2Authority313024Mapping file id313024 NCBI fileEvidenceIEA
GeneWasf3Authority682937Mapping file id682937 NCBI fileEvidenceIEA
GeneWdr11Authority309016Mapping file idENSRNOG00000020430 Ensembl fileEvidenceIEA
GeneWdr6Authority301007Mapping file id301007 NCBI fileEvidenceIEA
GeneWipf1Authority117538Mapping file id117538 NCBI fileEvidenceIEA
GeneWipf3Authority259242Mapping file id259242 NCBI fileEvidenceIEA
GeneWwp2Authority291999Mapping file id291999 NCBI fileEvidenceIEA
GeneXpo1Authority85252Mapping file id85252 NCBI fileEvidenceIEA
GeneYkt6Authority64351Mapping file id64351 NCBI fileEvidenceIEA
GeneYwhabAuthority56011Mapping file id56011 NCBI fileEvidenceIEA
GeneYwhaeAuthority29753Mapping file id29753 NCBI fileEvidenceIEA
GeneYwhagAuthority56010Mapping file id56010 NCBI fileEvidenceIEA
GeneYwhahAuthority25576Mapping file id25576 NCBI fileEvidenceIEA
GeneYwhaqAuthority25577Mapping file id25577 NCBI fileEvidenceIEA
GeneYwhazAuthority25578Mapping file id25578 NCBI fileEvidenceIEA
GeneZap70Authority301348Mapping file idENSRNOG00000016995 Ensembl fileEvidenceIEA
GeneZfp512bAuthority311721Mapping file id311721 NCBI fileEvidenceIEA
GeneZw10Authority363059Mapping file id363059 NCBI fileEvidenceIEA
GeneZwilchAuthority691493Mapping file idENSRNOG00000009303 Ensembl fileEvidenceIEA
GeneZwintAuthority257644Mapping file id257644 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.