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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

MITF-M-regulated melanocyte development

R-RNO-9730414 in Reactome release 97: under Developmental Biology, with 44 genes placed in it by the mapping files and 2 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9730414 (human), R-MMU-9730414 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 44 genes in this rat pathway; showing 1 to 44, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAimp1Authority114632Mapping file idENSRNOG00000011384 Ensembl fileEvidenceIEA
GeneAimp2Authority288480Mapping file id288480 NCBI fileEvidenceIEA
GeneAkt3Authority29414Mapping file id29414 NCBI fileEvidenceIEA
GeneCsf1Authority78965Mapping file idENSRNOG00000018659 Ensembl fileEvidenceIEA
GeneCtnnb1Authority84353Mapping file id84353 NCBI fileEvidenceIEA
GeneDars1Authority116483Mapping file id116483 NCBI fileEvidenceIEA
GeneEef1e1Authority291057Mapping file idENSRNOG00000066344 Ensembl fileEvidenceIEA
GeneEp300Authority170915Mapping file idENSRNOG00000065659 Ensembl fileEvidenceIEA
GeneEprs1Authority289352Mapping file id289352 NCBI fileEvidenceIEA
GeneGsk3bAuthority84027Mapping file id84027 NCBI fileEvidenceIEA
GeneHdac1Authority297893Mapping file id297893 NCBI fileEvidenceIEA
GeneHint1Authority690660Mapping file id690660 NCBI fileEvidenceIEA
GeneHint1-ps1Authority60580Mapping file idENSRNOG00000005630 Ensembl fileEvidenceIEA
GeneIars1Authority306804Mapping file id306804 NCBI fileEvidenceIEA
GeneKars1Authority292028Mapping file id292028 NCBI fileEvidenceIEA
GeneKitAuthority64030Mapping file id64030 NCBI fileEvidenceIEA
GeneKitlgAuthority60427Mapping file id60427 NCBI fileEvidenceIEA
GeneLars1Authority291624Mapping file id291624 NCBI fileEvidenceIEA
GeneLef1Authority161452Mapping file id161452 NCBI fileEvidenceIEA
GeneMapk1Authority116590Mapping file id116590 NCBI fileEvidenceIEA
GeneMapk3Authority50689Mapping file id50689 NCBI fileEvidenceIEA
GeneMark3Authority170577Mapping file id170577 NCBI fileEvidenceIEA
GeneMars1Authority299851Mapping file idENSRNOG00000025459 Ensembl fileEvidenceIEA
GeneMcm6Authority29685Mapping file idENSRNOG00000003703 Ensembl fileEvidenceIEA
GeneMitfAuthority25094Mapping file id25094 NCBI fileEvidenceIEA
GeneMlphAuthority316620Mapping file idENSRNOG00000019763 Ensembl fileEvidenceIEA
GeneMyo5aAuthority25017Mapping file id25017 NCBI fileEvidenceIEA
GeneMyripAuthority360034Mapping file id360034 NCBI fileEvidenceIEA
GeneQars1Authority290868Mapping file id290868 NCBI fileEvidenceIEA
GeneRab27aAuthority50645Mapping file id50645 NCBI fileEvidenceIEA
GeneRars1Authority287191Mapping file id287191 NCBI fileEvidenceIEA
GeneRps6ka1Authority81771Mapping file id81771 NCBI fileEvidenceIEA
GeneSin3aAuthority363067Mapping file idENSRNOG00000032254 Ensembl fileEvidenceIEA
GeneSirt1Authority309757Mapping file id309757 NCBI fileEvidenceIEA
GeneSox10Authority29361Mapping file id29361 NCBI fileEvidenceIEA
GeneSumo1Authority301442Mapping file id301442 NCBI fileEvidenceIEA
GeneSytl2Authority361604Mapping file id361604 NCBI fileEvidenceIEA
GeneTbx3Authority353305Mapping file id353305 NCBI fileEvidenceIEA
GeneTcf7Authority363595Mapping file idENSRNOG00000005872 Ensembl fileEvidenceIEA
GeneTcf7l1Authority312451Mapping file id312451 NCBI fileEvidenceIEA
GeneTcf7l2Authority679869Mapping file idENSRNOG00000049232 Ensembl fileEvidenceIEA
GeneTnfsf11Authority117516Mapping file id117516 NCBI fileEvidenceIEA
GeneUbe2iAuthority25573Mapping file id25573 NCBI fileEvidenceIEA
GeneXpo1Authority85252Mapping file id85252 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.