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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Formation of WDR5-containing histone-modifying complexes

R-RNO-9772755 in Reactome release 97: under Epigenetic regulation by WDR5-containing histone modifying complexes, with 38 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9772755 (human), R-MMU-9772755 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 38 genes in this rat pathway; showing 1 to 38, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAkap8lAuthority299569Mapping file id299569 NCBI fileEvidenceIEA
GeneAsh2lAuthority290829Mapping file id290829 NCBI fileEvidenceIEA
GeneBod1l1Authority207118Mapping file id207118 NCBI fileEvidenceIEA
GeneCxxc1Authority291440Mapping file id291440 NCBI fileEvidenceIEA
GeneDr1Authority289881Mapping file id289881 NCBI fileEvidenceIEA
GeneHcfc1Authority363519Mapping file idENSRNOG00000051948 Ensembl fileEvidenceIEA
GeneHcfc2Authority314704Mapping file id314704 NCBI fileEvidenceIEA
GeneKansl1Authority360642Mapping file id360642 NCBI fileEvidenceIEA
GeneKansl2Authority300206Mapping file id300206 NCBI fileEvidenceIEA
GeneKansl3Authority316328Mapping file id316328 NCBI fileEvidenceIEA
GeneKat14Authority362224Mapping file id362224 NCBI fileEvidenceIEA
GeneKat2aAuthority303539Mapping file id303539 NCBI fileEvidenceIEA
GeneKat2bAuthority301164Mapping file id301164 NCBI fileEvidenceIEA
GeneKat8Authority310194Mapping file id310194 NCBI fileEvidenceIEA
GeneKmt2aAuthority315606Mapping file id315606 NCBI fileEvidenceIEA
GeneKmt2bAuthority102550344Mapping file id102550344 NCBI fileEvidenceIEA
GeneKmt2cAuthority502710Mapping file idENSRNOG00000061080 Ensembl fileEvidenceIEA
GeneKmt2dAuthority100362634Mapping file id100362634 NCBI fileEvidenceIEA
GeneMbipAuthority362740Mapping file idENSRNOG00000008610 Ensembl fileEvidenceIEA
GeneMcrs1Authority300222Mapping file idENSRNOG00000054838 Ensembl fileEvidenceIEA
GeneMen1Authority29417Mapping file id29417 NCBI fileEvidenceIEA
GeneOgtAuthority26295Mapping file id26295 NCBI fileEvidenceIEA
GenePagr1Authority293500Mapping file id293500 NCBI fileEvidenceIEA
GenePaxip1Authority311944Mapping file idENSRNOG00000007131 Ensembl fileEvidenceIEA
GenePhf20Authority311575Mapping file id311575 NCBI fileEvidenceIEA
GenePhf20l1Authority314964Mapping file id314964 NCBI fileEvidenceIEA
GenePsip1Authority313323Mapping file id313323 NCBI fileEvidenceIEA
GeneRbbp5Authority304794Mapping file id304794 NCBI fileEvidenceIEA
GeneSetd1aAuthority309001Mapping file id309001 NCBI fileEvidenceIEA
GeneSetd1bAuthority100359816Mapping file id100359816 NCBI fileEvidenceIEA
GeneSgf29Authority293488Mapping file id293488 NCBI fileEvidenceIEA
GeneTada2aAuthority360581Mapping file id360581 NCBI fileEvidenceIEA
GeneTada3Authority362414Mapping file id362414 NCBI fileEvidenceIEA
GeneTasp1Authority311468Mapping file id311468 NCBI fileEvidenceIEA
GeneWdr5Authority362093Mapping file id362093 NCBI fileEvidenceIEA
GeneWdr82Authority686295Mapping file idENSRNOG00000048441 Ensembl fileEvidenceIEA
GeneYeats2Authority498112Mapping file id498112 NCBI fileEvidenceIEA
GeneZzz3Authority310958Mapping file id310958 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.