Gene Human Homo sapiens

CFAP161

cilia and flagella associated protein 161

gene with protein product

Human CFAP161MouseRat

Reading the ortholog votes for mouse and rat.

Location: Cytogenetic band 15q25.1NCBI: 15:81,099,408-81,149,179 on the plus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000015.10, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: no location was read.Coordinates are one-based with both ends included, as each source reports them.
Also known as: FLJ38615
Previous symbols: C15orf26

Gene identity, from HGNC · HGNC 2026-09-29 · read 2026-09-30 ET · HGNC:26782

Notes from the sources

Ensembl did not answer (upstream error).
Ensembl did not answer (upstream error); the Ensembl location and release are missing

Silence this gene

The order page opens with CFAP161 and human filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for CFAP161

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants

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Ready in a moment

01 Summary and function

What CFAP161 does

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

14 Silencing this gene

From CFAP161 to a sequence that silences it

The AUMsilence platform designs the sequences against the human transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.

Gene Human Homo sapiens

CFAP161

Reading the record for CFAP161 from HGNC, NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for CFAP161 opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What CFAP161 does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where CFAP161 is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein CFAP161 encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with CFAP161

Waiting for the record before reading STRING.

06 Pathways

Where CFAP161 acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to CFAP161

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of CFAP161

Waiting for the record before reading ClinVar.

09 Constraint

How much variation CFAP161 tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within CFAP161

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the CFAP161 locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention CFAP161

Waiting for the record before reading Europe PMC.

CFAP161

cilia and flagella associated protein 161

gene with protein product

Human CFAP161MouseRat

Reading the ortholog votes for mouse and rat.

Location

Cytogenetic band 15q25.1NCBI: 15:81,099,408-81,149,179 on the plus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000015.10, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: no location was read.Coordinates are one-based with both ends included, as each source reports them.

Also known as

FLJ38615

Previous symbols

C15orf26

Gene identity, from HGNC · HGNC 2026-09-29 · read 2026-09-30 ET · HGNC:26782

Notes from the sources

Ensembl did not answer (upstream error).
Ensembl did not answer (upstream error); the Ensembl location and release are missing

RefSeq transcripts of this gene
Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_173528.4matches ENST00000286732.5	transcript variant 1	protein coding	MANE Select	7	1,612 nt	301 aaNP_775799.2	Ready in a moment
XM_006720408.3	transcript variant X1	protein coding model	none	8	1,732 nt	276 aaXP_006720471.1	Ready in a moment
XM_017021963.2	transcript variant X2	protein coding model	none	8	1,660 nt	276 aaXP_016877452.1	Ready in a moment
NM_001353365.2	transcript variant 2	protein coding	none	Ready in a moment

Accession

Name

Biotype

Labels

Exons

Spliced length

Protein

Sequence

NM_173528.4matches ENST00000286732.5

transcript variant 1

protein coding

MANE Select

1,612 nt

301 aaNP_775799.2

Ready in a moment

XM_006720408.3

transcript variant X1

protein coding model

none

1,732 nt

276 aaXP_006720471.1

Ready in a moment

XM_017021963.2

transcript variant X2

protein coding model

none

1,660 nt

276 aaXP_016877452.1

Ready in a moment

NM_001353365.2

transcript variant 2

protein coding

none

Ready in a moment

From CFAP161 to a sequence that silences it

Choose the region

A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.

Cover the isoforms you mean

An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.

Think across species early

The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.

Check expression in your model

A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.

RefSeq transcripts of this gene
Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_173528.4matches ENST00000286732.5	transcript variant 1	protein coding	MANE Select	7	1,612 nt	301 aaNP_775799.2	Ready in a moment
XM_006720408.3	transcript variant X1	protein coding model	none	8	1,732 nt	276 aaXP_006720471.1	Ready in a moment
XM_017021963.2	transcript variant X2	protein coding model	none	8	1,660 nt	276 aaXP_016877452.1	Ready in a moment
NM_001353365.2	transcript variant 2	protein coding	none	Ready in a moment

Accession

Name

Biotype

Labels

Exons

Spliced length

Protein

Sequence

NM_173528.4matches ENST00000286732.5

transcript variant 1

protein coding

MANE Select

1,612 nt

301 aaNP_775799.2

Ready in a moment

XM_006720408.3

transcript variant X1

protein coding model

none

1,732 nt

276 aaXP_006720471.1

Ready in a moment

XM_017021963.2

transcript variant X2

protein coding model

none

1,660 nt

276 aaXP_016877452.1

Ready in a moment

NM_001353365.2

transcript variant 2

protein coding

none

Ready in a moment

CFAP161

What CFAP161 does

The RNA a design targets

From CFAP161 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

CFAP161

What CFAP161 does

The RNA a design targets

Where CFAP161 is expressed

The protein CFAP161 encodes

Proteins STRING associates with CFAP161

Where CFAP161 acts, as Reactome curates it

Diseases linked to CFAP161

Classified variants of CFAP161

How much variation CFAP161 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within CFAP161

Long non-coding RNAs at the CFAP161 locus

Papers that mention CFAP161

CFAP161

What CFAP161 does

Gene summary

Protein function

The RNA a design targets

RefSeq 4 transcripts

A window on one transcript

Ensembl 0 transcripts

From CFAP161 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Where CFAP161 is expressed

The protein CFAP161 encodes

Proteins STRING associates with CFAP161

Where CFAP161 acts, as Reactome curates it

Diseases linked to CFAP161

Classified variants of CFAP161

How much variation CFAP161 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within CFAP161

Long non-coding RNAs at the CFAP161 locus

Papers that mention CFAP161

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 4 transcripts

A window on one transcript

Ensembl 0 transcripts