Reading the record for MIR9-3HG from HGNC, NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.
The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.
Order door
The door to order for MIR9-3HG opens with the record, which decides which product it carries. The order page itself is open now.
Cytogenetic band 15q26.1NCBI: 15:89,361,579-89,398,488 on the plus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000015.10, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: 15:89,361,579-89,424,983 on the plus strand, GRCh38.p14 (GCA_000001405.29), release 116Coordinates are one-based with both ends included, as each source reports them.
NCBI Gene carries no curated summary for this gene. UniProt has 0 reviewed entries named MIR9-3HG in human.
NCBI Gene summary
Ready in a moment
Reading NCBI Gene and UniProt.Still reading. A first read of a gene can take a while; this page waits up to 30 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.
02 / Transcripts and isoforms
The RNA a design targets
41 RefSeq and 54 Ensembl transcripts on GRCh38.p14; Ensembl canonical ENST00000701636.1.
NCBI Datasets · Ensembl
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Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.
03 / Expression by tissue
Where MIR9-3HG is expressed
54 GTEx tissues; the highest median in Brain - Cerebellum, 31.2 TPM.
GTEx
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04 / Protein
The protein MIR9-3HG encodes
UniProt did not give one reviewed entry for MIR9-3HG in human, so InterPro, AlphaFold DB and PDBe were not asked and no protein entry is shown.
UniProt
Ready in a moment
05 / Interactions
Proteins STRING associates with MIR9-3HG
STRING v12.0 has no protein named MIR9-3HG in human.
STRING
Ready in a moment
06 / Pathways
Where MIR9-3HG acts, as Reactome curates it
UniProt did not give one reviewed entry for MIR9-3HG in human, so Reactome was not asked and no pathway list is shown.
UniProt
Ready in a moment
07 / Disease associations
Diseases linked to MIR9-3HG
Reading Open Targets and ClinGen.Still reading. A first read of a gene can take a while; this page waits up to 105 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
08 / Variants
Classified variants of MIR9-3HG
Reading ClinVar.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
09 / Constraint
How much variation MIR9-3HG tolerates
Reading gnomAD and Open Targets.Still reading. A first read of a gene can take a while; this page waits up to 45 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
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10 / Orthologs
The same gene in mouse, rat and human
Mouse Mir9-3hg by 1 of 3 votes; rat: no ortholog named by the 3 votes that answered. RGD is not answering, so the ortholog list could not be shown. Try again later. Reference 434f0c8c-d28.
Alliance · NCBI · Ensembl Compara
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11 /MicroRNAs
MicroRNAs hosted within MIR9-3HG
1 microRNA gene overlaps MIR9-3HG in Ensembl release 116: MIR9-3.
139 PubMed-indexed papers mention MIR9-3HG at Europe PMC, newest first. Europe PMC ignores letter case, so the count also covers another species' symbol spelled with the same letters.
Europe PMC
Ready in a moment
14 / Silencing this gene
From MIR9-3HG to a sequence that silences it
This is a long non-coding RNA gene. The order page opens with MIR9-3HG and human filled in, on AUMlnc™ sdASO™, with AUMlnc toASO beside it, and the price on that page. Its long non-coding RNA page sets out the steps that come first, each with the sources it rests on.
For research use only. Not for use in diagnostic or therapeutic procedures.
Rat: no ortholog is named for this gene: the Alliance, NCBI and Ensembl Compara answered and named none.
Gene summary
NCBI Gene carries no curated summary for this gene.
Protein function
Not available
UniProt has 0 reviewed entries named MIR9-3HG in human.
NCBI Gene summary · NCBI Gene annotation RS_2025_08 · read · NCBI Gene 254559Data from NCBI, provided as is; NCBI's policies and disclaimers apply.
Placed on GRCh38.p14 (GCF_000001405.40). MANE Select marks the one transcript RefSeq and Ensembl agree is the reference for this gene.
RefSeq 41 transcripts
coding sequence, tall
untranslated region, thin
non-coding exon
intron, fixed width
Genomic strand: plus. Drawn 5' to 3', so exon 1 sits at the left here and at the lowest coordinate on the chromosome.
NR_133001.2NR_133001.2
NR_190310.1NR_190310.1
NR_190315.1NR_190315.1
NR_190324.1NR_190324.1
NR_133003.2NR_133003.2
NR_190312.1NR_190312.1
NR_190318.1NR_190318.1
NR_190322.1NR_190322.1
NR_190319.1NR_190319.1
NR_190314.1NR_190314.1
NR_190304.1NR_190304.1
NR_190308.1NR_190308.1
NR_190303.1NR_190303.1
NR_015411.2NR_015411.2
NR_190316.1NR_190316.1
NR_190321.1NR_190321.1
NR_133002.2NR_133002.2
NR_190305.1NR_190305.1
NR_190306.1NR_190306.1
NR_190307.1NR_190307.1
NR_190326.1NR_190326.1
NR_190299.1NR_190299.1
NR_190317.1NR_190317.1
NR_190320.1NR_190320.1
NR_190311.1NR_190311.1
NR_190325.1NR_190325.1
NR_190323.1NR_190323.1
NR_190302.1NR_190302.1
NR_190298.1NR_190298.1
NR_190290.1NR_190290.1
NR_190301.1NR_190301.1
NR_190309.1NR_190309.1
NR_190294.1NR_190294.1
NR_190295.1NR_190295.1
NR_190296.1NR_190296.1
NR_190293.1NR_190293.1
NR_190300.1NR_190300.1
NR_190292.1NR_190292.1
NR_190297.1NR_190297.1
NR_190313.1NR_190313.1
NR_190291.1NR_190291.1
scale
Drawn 5' to 3' from each transcript's exons as placed on the reference assembly; exon 1 is the 5' exon on the transcript's own strand. Exon blocks are to scale with each other; introns are drawn at one fixed width whatever their length, so the map is not to scale along the chromosome. Numbers are exon ranks along the strand; a rank is omitted where the exon is too narrow to carry it.
A window on one transcript
One pixel of the map above stands for several bases, and a block too short to see is drawn wider than its own scale, so the map chooses a region and the sequence here chooses the window. Click an exon on a row of the map, or drag across a row; then set the exact start and end below.
These controls are ready in a moment.
No transcript is chosen.
Once a window is chosen this panel shows its length, its G and C count as a percentage of that length, the letters it is made of, the exons it falls in, whether it crosses a junction, and its antisense strand.
Drawn 5' to 3' from each transcript's exons as placed on the reference assembly; exon 1 is the 5' exon on the transcript's own strand. Exon blocks are to scale with each other; introns are drawn at one fixed width whatever their length, so the map is not to scale along the chromosome. Numbers are exon ranks along the strand; a rank is omitted where the exon is too narrow to carry it. Showing 1 of 54 isoforms: the ones this catalogue marks as its reference.
A window on one transcript
One pixel of the map above stands for several bases, and a block too short to see is drawn wider than its own scale, so the map chooses a region and the sequence here chooses the window. Click an exon on a row of the map, or drag across a row; then set the exact start and end below.
These controls are ready in a moment.
No transcript is chosen.
Once a window is chosen this panel shows its length, its G and C count as a percentage of that length, the letters it is made of, the exons it falls in, whether it crosses a junction, and its antisense strand.
53 more isoforms are annotated for this gene, carrying 299 exons between them. They are drawn when you ask for them, so that a page for a gene this large does not arrive as several megabytes.
Lengths are spliced lengths, as each source states them. Exon ranks follow the strand: on a minus-strand gene exon 1 has the highest genomic coordinate. Reference assembly for human: GRCh38.
ClinVar: 12 records for MIR9-3HG, 11 pathogenic or likely pathogenic.
ClinVar
15 Open Targets disease associations; metabolic syndrome first, at 0.07.
Open Targets
gnomAD holds MIR9-3HG but its record carries no constraint metrics.
