Gene Human Homo sapiens

SHISAL2A

shisa like 2A

gene with protein product

Human SHISAL2AMouseRat

Reading the ortholog votes for mouse and rat.

Location: Cytogenetic band 1p32.3NCBI: 1:52,632,788-52,669,683 on the plus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000001.11, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: 1:52,633,168-52,670,143 on the plus strand, GRCh38.p14 (GCA_000001405.29), release 116Coordinates are one-based with both ends included, as each source reports them.
Also known as: MGC52498
Previous symbols: FAM159A

Gene identity, from HGNC · HGNC 2026-09-29 · read 2026-10-02 ET · HGNC:28757

Silence this gene

The order page opens with SHISAL2A and human filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for SHISAL2A

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants
Constraint
Orthologs
MicroRNAs
Long non-coding RNAs
Literature
Silencing this gene

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Ready in a moment

01 Summary and function

What SHISAL2A does

Predicted to be located in membrane.

NCBI Gene summary

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

03 Expression by tissue

Where SHISAL2A is expressed

Reading GTEx and the Human Protein Atlas.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

04 Protein

The protein SHISAL2A encodes

Reading UniProt, InterPro, AlphaFold DB and PDBe.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

05 Interactions

Proteins STRING associates with SHISAL2A

Reading STRING.Still reading. A first read of a gene can take a while; this page waits up to 50 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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06 Pathways

Where SHISAL2A acts, as Reactome curates it

Reading UniProt and Reactome.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

07 Disease associations

Diseases linked to SHISAL2A

18 Open Targets disease associations; atrial fibrillation first, at 0.28.

Open Targets

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08 Variants

Classified variants of SHISAL2A

Reading ClinVar.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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09 Constraint

How much variation SHISAL2A tolerates

Reading gnomAD and Open Targets.Still reading. A first read of a gene can take a while; this page waits up to 45 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

10 Orthologs

The same gene in mouse, rat and human

Reading the Alliance, NCBI, Ensembl Compara and RGD.Still reading. A first read of a gene can take a while; this page waits up to 145 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

11 MicroRNAs

MicroRNAs hosted within SHISAL2A

Reading Ensembl and miRBase.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

12 Long non-coding RNAs

Long non-coding RNAs at the SHISAL2A locus

Reading Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

13 Literature

Papers that mention SHISAL2A

Reading Europe PMC.Still reading. A first read of a gene can take a while; this page waits up to 55 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

14 Silencing this gene

From SHISAL2A to a sequence that silences it

The AUMsilence platform designs the sequences against the human transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

Order for SHISAL2A Bring your own sequence The usage guide Selection guide

For research use only. Not for use in diagnostic or therapeutic procedures.

Gene Human Homo sapiens

SHISAL2A

Reading the record for SHISAL2A from HGNC, NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for SHISAL2A opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What SHISAL2A does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where SHISAL2A is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein SHISAL2A encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with SHISAL2A

Waiting for the record before reading STRING.

06 Pathways

Where SHISAL2A acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to SHISAL2A

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of SHISAL2A

Waiting for the record before reading ClinVar.

09 Constraint

How much variation SHISAL2A tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within SHISAL2A

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the SHISAL2A locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention SHISAL2A

Waiting for the record before reading Europe PMC.

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001042693.3matches ENST00000517870.2	transcript variant 1	protein coding	MANE Select	3	924 nt	190 aaNP_001036158.1	Ready in a moment
XM_011541378.3	transcript variant X4	protein coding model	none	4	843 nt	171 aaXP_011539680.1	Ready in a moment
XM_011541377.3	transcript variant X1	protein coding model	none	3	668 nt	194 aaXP_011539679.1	Ready in a moment
NR_135156.2matches ENST00000401050.7	transcript variant 2	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001042693.3matches ENST00000517870.2	transcript variant 1	protein coding	MANE Select	3	924 nt	190 aaNP_001036158.1	Ready in a moment
XM_011541378.3	transcript variant X4	protein coding model	none	4	843 nt	171 aaXP_011539680.1	Ready in a moment
XM_011541377.3	transcript variant X1	protein coding model	none	3	668 nt	194 aaXP_011539679.1	Ready in a moment
NR_135156.2matches ENST00000401050.7	transcript variant 2	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
ENST00000517870.2matches NM_001042693.3	SHISAL2A-204	protein coding	MANE SelectEnsembl canonical	3	924 nt	190 aaENSP00000429726.1	Ready in a moment
ENST00000990255.1	SHISAL2A-205	nonsense mediated decay	none	4	2,405 nt	110 aaENSP00000660072.1	Ready in a moment
ENST00001011052.1	SHISAL2A-207	nonsense mediated decay	none	5	1,742 nt	136 aaENSP00000680869.1	Ready in a moment
ENST00000990256.1	SHISAL2A-206	nonsense mediated decay	none	3	1,242 nt	72 aaENSP00000660073.1	Ready in a moment
ENST00000401050.7	SHISAL2A-201	protein coding cds not defined	none	6	1,992 nt	none	Ready in a moment
ENST00000440303.5	SHISAL2A-203	protein coding cds not defined	none	5	1,468 nt	none	Ready in a moment
ENST00000424164.1	SHISAL2A-202	protein coding cds not defined	none	3	513 nt	none	Ready in a moment

SHISAL2A

What SHISAL2A does

The RNA a design targets

Where SHISAL2A is expressed

The protein SHISAL2A encodes

Proteins STRING associates with SHISAL2A

Where SHISAL2A acts, as Reactome curates it

Diseases linked to SHISAL2A

Classified variants of SHISAL2A

How much variation SHISAL2A tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within SHISAL2A

Long non-coding RNAs at the SHISAL2A locus

Papers that mention SHISAL2A

From SHISAL2A to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

SHISAL2A

What SHISAL2A does

The RNA a design targets

Where SHISAL2A is expressed

The protein SHISAL2A encodes

Proteins STRING associates with SHISAL2A

Where SHISAL2A acts, as Reactome curates it

Diseases linked to SHISAL2A

Classified variants of SHISAL2A

How much variation SHISAL2A tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within SHISAL2A

Long non-coding RNAs at the SHISAL2A locus

Papers that mention SHISAL2A

SHISAL2A

What SHISAL2A does

Gene summary

Protein function

The RNA a design targets

RefSeq 11 transcripts

A window on one transcript

Ensembl 7 transcripts

A window on one transcript

Where SHISAL2A is expressed

The protein SHISAL2A encodes

Proteins STRING associates with SHISAL2A

Where SHISAL2A acts, as Reactome curates it

Diseases linked to SHISAL2A

Classified variants of SHISAL2A

How much variation SHISAL2A tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within SHISAL2A

Long non-coding RNAs at the SHISAL2A locus

Papers that mention SHISAL2A

From SHISAL2A to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 11 transcripts

A window on one transcript

Ensembl 7 transcripts

A window on one transcript