Reading the record for SLC9B2 from HGNC, NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.
The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.
Order door
The door to order for SLC9B2 opens with the record, which decides which product it carries. The order page itself is open now.
Cytogenetic band 4q24NCBI: 4:103,018,029-103,077,319 on the minus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000004.12, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: 4:103,019,868-103,085,829 on the minus strand, GRCh38.p14 (GCA_000001405.29), release 116Coordinates are one-based with both ends included, as each source reports them.
Sodium hydrogen antiporters, such as NHEDC2, convert the proton motive force… UniProt is not answering, so the protein entry could not be shown. Try again later. Reference 490f030f-2ff.
NCBI Gene summary
Ready in a moment
Reading NCBI Gene and UniProt.Still reading. A first read of a gene can take a while; this page waits up to 30 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.
02 / Transcripts and isoforms
The RNA a design targets
Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.
03 / Expression by tissue
Where SLC9B2 is expressed
54 GTEx tissues; the highest median in Brain - Cerebellar Hemisphere, 17.4 TPM.
GTEx
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04 / Protein
The protein SLC9B2 encodes
UniProt is not answering, so the protein entry could not be shown. Try again later. Reference 490f030f-2ff.
Ready in a moment
05 / Interactions
Proteins STRING associates with SLC9B2
The 16 highest-scoring STRING partners at or above a combined score of 0.4, of up to 25 asked for; SLC9A5, SLC9A6, SLC9A2 lead.
STRING v12.0
Ready in a moment
06 / Pathways
Where SLC9B2 acts, as Reactome curates it
UniProt is not answering, so the pathway list could not be shown. Try again later. Reference 490f030f-2ff.
Ready in a moment
07 / Disease associations
Diseases linked to SLC9B2
119 Open Targets disease associations; neurodegenerative disease first, at 0.17.
Open Targets
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08 / Variants
Classified variants of SLC9B2
Reading ClinVar.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
09 / Constraint
How much variation SLC9B2 tolerates
pLI below 0.0001 and LOEUF 0.976 in gnomAD v4 (GRCh38), on ENST00000394785.9.
gnomAD
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10 / Orthologs
The same gene in mouse, rat and human
Reading the Alliance, NCBI, Ensembl Compara and RGD.Still reading. A first read of a gene can take a while; this page waits up to 145 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
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11 /MicroRNAs
MicroRNAs hosted within SLC9B2
Reading Ensembl and miRBase.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
12 / Long non-coding RNAs
Long non-coding RNAs at the SLC9B2 locus
Reading Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.
Ready in a moment
13 / Literature
Papers that mention SLC9B2
197 PubMed-indexed papers mention SLC9B2 at Europe PMC, newest first. Europe PMC ignores letter case, so the count also covers another species' symbol spelled with the same letters.
Europe PMC
Ready in a moment
14 / Silencing this gene
From SLC9B2 to a sequence that silences it
The AUMsilence™ platform designs the sequences against the human transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.
01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA™ is the siRNA route. The selection guide compares them.
For research use only. Not for use in diagnostic or therapeutic procedures.
Gene summary
Sodium hydrogen antiporters, such as NHEDC2, convert the proton motive force established by the respiratory chain or the F1F0 mitochondrial ATPase into sodium gradients that drive other energy-requiring processes, transduce environmental signals into cell responses, or function in drug efflux (Xiang et al., 2007 [PubMed 18000046]).[supplied by OMIM, Mar 2008]
As NCBI Gene carries it, with no provenance bracket. NCBI disclaimer
Protein function
Not read
UniProt is not answering, so the protein entry could not be shown. Try again later.
Reference 490f030f-2ff
NCBI Gene summary · NCBI Gene annotation RS_2025_08 · read · NCBI Gene 133308Data from NCBI, provided as is; NCBI's policies and disclaimers apply.
No annotated microRNA lies within SLC9B2 in Ensembl release 116, on GRCh38.p14.
Ensembl · miRBase
1 long non-coding RNA gene overlaps SLC9B2 in Ensembl release 116, antisense, without a symbol.
12 RefSeq and 48 Ensembl transcripts on GRCh38.p14; MANE Select NM_178833.7.
NCBI Datasets · Ensembl
Placed on GRCh38.p14 (GCF_000001405.40). MANE Select marks the one transcript RefSeq and Ensembl agree is the reference for this gene.
RefSeq 12 transcripts
coding sequence, tall
untranslated region, thin
non-coding exon
intron, fixed width
Genomic strand: minus. Drawn 5' to 3', so exon 1 sits at the left here and at the highest coordinate on the chromosome.
NM_178833.7NM_178833.7MANE Select
A window on one transcript
One pixel of the map above stands for several bases, and a block too short to see is drawn wider than its own scale, so the map chooses a region and the sequence here chooses the window. Click an exon on a row of the map, or drag across a row; then set the exact start and end below.
These controls are ready in a moment.
No transcript is chosen.
Once a window is chosen this panel shows its length, its G and C count as a percentage of that length, the letters it is made of, the exons it falls in, whether it crosses a junction, and its antisense strand.
NCBI Datasets, RefSeq transcripts · NCBI Datasets 18.38.0; GCF_000001405.40-RS_2025_08 · read · NCBI Gene 133308Data from NCBI, provided as is; NCBI's policies and disclaimers apply.
Ensembl 48 transcripts
A window on one transcript
One pixel of the map above stands for several bases, and a block too short to see is drawn wider than its own scale, so the map chooses a region and the sequence here chooses the window. Click an exon on a row of the map, or drag across a row; then set the exact start and end below.
These controls are ready in a moment.
No transcript is chosen.
Once a window is chosen this panel shows its length, its G and C count as a percentage of that length, the letters it is made of, the exons it falls in, whether it crosses a junction, and its antisense strand.
Lengths are spliced lengths, as each source states them. Exon ranks follow the strand: on a minus-strand gene exon 1 has the highest genomic coordinate. Reference assembly for human: GRCh38.
NM_001370199.1NM_001370199.1
NM_001370203.1NM_001370203.1
NM_001370200.1NM_001370200.1
NM_001300756.2NM_001300756.2
NM_001370207.1NM_001370207.1
NM_001300754.2NM_001300754.2
NM_001370202.1NM_001370202.1
NM_001370206.1NM_001370206.1
NM_001370204.1NM_001370204.1
NM_001370205.1NM_001370205.1
NM_001370201.1NM_001370201.1
scale
Drawn 5' to 3' from each transcript's exons as placed on the reference assembly; exon 1 is the 5' exon on the transcript's own strand. Exon blocks are to scale with each other; introns are drawn at one fixed width whatever their length, so the map is not to scale along the chromosome. Numbers are exon ranks along the strand; a rank is omitted where the exon is too narrow to carry it.
Drawn 5' to 3' from each transcript's exons as placed on the reference assembly; exon 1 is the 5' exon on the transcript's own strand. Exon blocks are to scale with each other, except 4 blocks too short to see, widened to a fixed few pixels; introns are drawn at one fixed width whatever their length, so the map is not to scale along the chromosome. Numbers are exon ranks along the strand; a rank is omitted where the exon is too narrow to carry it.
ClinVar: 113 records for SLC9B2, 16 pathogenic or likely pathogenic.
ClinVar
Mouse Slc9b2 by 3 of 3 votes; rat Slc9b2 by 2 of 3 votes. RGD is not answering, so the ortholog list could not be shown. Try again later. Reference bb1a742a-58d.
