Gene Human Homo sapiens

TNRC18

trinucleotide repeat containing 18

gene with protein product

Human TNRC18MouseRat

Reading the ortholog votes for mouse and rat.

Location: Cytogenetic band 7p22.1NCBI: 7:5,306,811-5,423,834 on the minus strand, GRCh38.p14 (GCF_000001405.40), sequence NC_000007.14, annotation GCF_000001405.40-RS_2025_08 of 2025-08-01Ensembl: 7:5,306,790-5,425,414 on the minus strand, GRCh38.p14 (GCA_000001405.29), release 116Coordinates are one-based with both ends included, as each source reports them.
Also known as: CAGL79, TNRC18A, KIAA1856

Gene identity, from HGNC · HGNC 2026-09-29 · read 2026-09-30 ET · HGNC:11962

Silence this gene

The order page opens with TNRC18 and human filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for TNRC18

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants
Constraint
Orthologs
MicroRNAs
Long non-coding RNAs
Literature
Silencing this gene

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Ready in a moment

01 Summary and function

What TNRC18 does

Enables histone H3K9me2/3 reader activity.

NCBI Gene summary

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

03 Expression by tissue

Where TNRC18 is expressed

54 GTEx tissues; the highest median in Uterus, 79.0 TPM.

GTEx

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04 Protein

The protein TNRC18 encodes

Reading UniProt, InterPro, AlphaFold DB and PDBe.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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05 Interactions

Proteins STRING associates with TNRC18

The 19 highest-scoring STRING partners at or above a combined score of 0.4, of up to 25 asked for; SIN3B, SINHCAF, SAP30 lead.

STRING v12.0

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06 Pathways

Where TNRC18 acts, as Reactome curates it

Reading UniProt and Reactome.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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07 Disease associations

Diseases linked to TNRC18

642 Open Targets disease associations; Abnormality of the skeletal system first, at 0.51.

Open Targets

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08 Variants

Classified variants of TNRC18

Reading ClinVar.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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09 Constraint

How much variation TNRC18 tolerates

pLI above 0.9999 and LOEUF 0.372 in gnomAD v4 (GRCh38), on ENST00000430969.6.

gnomAD

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10 Orthologs

The same gene in mouse, rat and human

Reading the Alliance, NCBI, Ensembl Compara and RGD.Still reading. A first read of a gene can take a while; this page waits up to 145 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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11 MicroRNAs

MicroRNAs hosted within TNRC18

No annotated microRNA lies within TNRC18 in Ensembl release 116, on GRCh38.p14.

Ensembl · miRBase

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12 Long non-coding RNAs

Long non-coding RNAs at the TNRC18 locus

3 long non-coding RNA genes overlap TNRC18 in Ensembl release 116, all antisense: LINC03073, TNRC18-AS1 and 1 without a symbol.

Ensembl

Order against a long non-coding RNA

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13 Literature

Papers that mention TNRC18

Reading Europe PMC.Still reading. A first read of a gene can take a while; this page waits up to 55 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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14 Silencing this gene

From TNRC18 to a sequence that silences it

The AUMsilence platform designs the sequences against the human transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

Order for TNRC18 Bring your own sequence The usage guide Selection guide

For research use only. Not for use in diagnostic or therapeutic procedures.

Gene Human Homo sapiens

TNRC18

Reading the record for TNRC18 from HGNC, NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for TNRC18 opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What TNRC18 does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where TNRC18 is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein TNRC18 encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with TNRC18

Waiting for the record before reading STRING.

06 Pathways

Where TNRC18 acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to TNRC18

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of TNRC18

Waiting for the record before reading ClinVar.

09 Constraint

How much variation TNRC18 tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within TNRC18

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the TNRC18 locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention TNRC18

Waiting for the record before reading Europe PMC.

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001080495.3matches ENST00000430969.6	none given	protein coding	MANE Select	30	10,839 nt	2,968 aaNP_001073964.2	Ready in a moment
XM_047420977.1	transcript variant X3	protein coding model	none	31	11,110 nt	2,979 aaXP_047276933.1	Ready in a moment
XM_017012730.2	transcript variant X5	protein coding model	none	30	10,916 nt	2,978 aaXP_016868219.1	Ready in a moment
XM_047420979.1	transcript variant X6	protein coding model	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001080495.3matches ENST00000430969.6	none given	protein coding	MANE Select	30	10,839 nt	2,968 aaNP_001073964.2	Ready in a moment
XM_047420977.1	transcript variant X3	protein coding model	none	31	11,110 nt	2,979 aaXP_047276933.1	Ready in a moment
XM_017012730.2	transcript variant X5	protein coding model	none	30	10,916 nt	2,978 aaXP_016868219.1	Ready in a moment
XM_047420979.1	transcript variant X6	protein coding model	Ready in a moment

TNRC18

What TNRC18 does

The RNA a design targets

Where TNRC18 is expressed

The protein TNRC18 encodes

Proteins STRING associates with TNRC18

Where TNRC18 acts, as Reactome curates it

Diseases linked to TNRC18

Classified variants of TNRC18

How much variation TNRC18 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within TNRC18

Long non-coding RNAs at the TNRC18 locus

Papers that mention TNRC18

From TNRC18 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

TNRC18

What TNRC18 does

The RNA a design targets

Where TNRC18 is expressed

The protein TNRC18 encodes

Proteins STRING associates with TNRC18

Where TNRC18 acts, as Reactome curates it

Diseases linked to TNRC18

Classified variants of TNRC18

How much variation TNRC18 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within TNRC18

Long non-coding RNAs at the TNRC18 locus

Papers that mention TNRC18

TNRC18

What TNRC18 does

Gene summary

Protein function

The RNA a design targets

RefSeq 16 transcripts

A window on one transcript

Ensembl 0 transcripts

Where TNRC18 is expressed

The protein TNRC18 encodes

Proteins STRING associates with TNRC18

Where TNRC18 acts, as Reactome curates it

Diseases linked to TNRC18

Classified variants of TNRC18

How much variation TNRC18 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within TNRC18

Long non-coding RNAs at the TNRC18 locus

Papers that mention TNRC18

From TNRC18 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 16 transcripts

A window on one transcript

Ensembl 0 transcripts