Gene Mouse Mus musculus

Alppl2

alkaline phosphatase, placental-like 2

protein coding

HumanMouse Alppl2Rat

Reading the ortholog votes for human and rat.

HGNC and MANE Select: not available for mouse. HGNC names human genes; MGI is the authority here, and MANE Select is defined for human transcripts only.

Location: Cytogenetic band 1 C5NCBI: 1:87,014,412-87,023,656 on the minus strand, GRCm39 (GCF_000001635.27), sequence NC_000067.7, annotation GCF_000001635.27-RS_2024_02 of 2024-02-01Ensembl: 1:87,014,416-87,017,650 on the minus strand, GRCm39 (GCA_000001635.9), release 116Coordinates are one-based with both ends included, as each source reports them.
Also known as: EAP, Akp5, Alpg, D1Ertd816e

Gene identity, from NCBI Datasets · NCBI Datasets 18.38.0 · read 2026-10-01 ET · MGI:108009Data from NCBI, provided as is; NCBI's policies and disclaimers apply.

Silence this gene

The order page opens with Alppl2 and mouse filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for Alppl2

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants
Constraint
Orthologs
MicroRNAs
Long non-coding RNAs
Literature
Silencing this gene

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01 Summary and function

What Alppl2 does

Predicted to enable alkaline phosphatase activity.

NCBI Gene summary

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

03 Expression by tissue

Where Alppl2 is expressed

Expression by tissue: not available for mouse. GTEx holds human tissues only, and the Human Protein Atlas is keyed on human genes.

Ready in a moment

04 Protein

The protein Alppl2 encodes

Reading UniProt, InterPro, AlphaFold DB and PDBe.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

05 Interactions

Proteins STRING associates with Alppl2

The 25 highest-scoring STRING partners at or above a combined score of 0.4, of up to 25 asked for; Gch1, Ntpcr, Pts lead.

STRING v12.0

Ready in a moment

06 Pathways

Where Alppl2 acts, as Reactome curates it

Reading UniProt and Reactome.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

07 Disease associations

Diseases linked to Alppl2

Disease associations: not available for mouse. Open Targets and ClinGen curate human genes only. The human ortholog's page carries the associations.

Ready in a moment

08 Variants

Classified variants of Alppl2

Clinical variants: not available for mouse. ClinVar holds human variants only.

Ready in a moment

09 Constraint

How much variation Alppl2 tolerates

Constraint: not available for mouse. gnomAD and Open Targets carry constraint for human genes only.

Ready in a moment

10 Orthologs

The same gene in mouse, rat and human

Human: 3 candidates named (ALPP, ALPG, ALPI) and the votes differ; rat Alpp by 2 of 3 votes. RGD is not answering, so the ortholog list could not be shown. Try again later. Reference b7b38e2e-635.

Alliance · NCBI · Ensembl Compara

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11 MicroRNAs

MicroRNAs hosted within Alppl2

No annotated microRNA lies within Alppl2 in Ensembl release 116, on GRCm39.

Ensembl · miRBase

Ready in a moment

12 Long non-coding RNAs

Long non-coding RNAs at the Alppl2 locus

1 long non-coding RNA gene overlaps Alppl2 in Ensembl release 116, antisense: Gm29371.

Ensembl

Order against a long non-coding RNA

Ready in a moment

13 Literature

Papers that mention Alppl2

Reading Europe PMC.Still reading. A first read of a gene can take a while; this page waits up to 55 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

14 Silencing this gene

From Alppl2 to a sequence that silences it

The AUMsilence platform designs the sequences against the mouse transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

Order for Alppl2 Bring your own sequence The usage guide Selection guide

For research use only. Not for use in diagnostic or therapeutic procedures.

Gene Mouse Mus musculus

Alppl2

Reading the record for Alppl2 from NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for Alppl2 opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What Alppl2 does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where Alppl2 is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein Alppl2 encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with Alppl2

Waiting for the record before reading STRING.

06 Pathways

Where Alppl2 acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to Alppl2

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of Alppl2

Waiting for the record before reading ClinVar.

09 Constraint

How much variation Alppl2 tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within Alppl2

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the Alppl2 locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention Alppl2

Waiting for the record before reading Europe PMC.

Alppl2

alkaline phosphatase, placental-like 2

protein coding

Human: several candidates are named (ALPP, ALPG, ALPI), each marked the best match. The orthologs panel below shows every vote.

HumanMouse Alppl2Rat

Reading the ortholog votes for human and rat.

HGNC and MANE Select: not available for mouse. HGNC names human genes; MGI is the authority here, and MANE Select is defined for human transcripts only.

Location

Cytogenetic band 1 C5NCBI: 1:87,014,412-87,023,656 on the minus strand, GRCm39 (GCF_000001635.27), sequence NC_000067.7, annotation GCF_000001635.27-RS_2024_02 of 2024-02-01Ensembl: 1:87,014,416-87,017,650 on the minus strand, GRCm39 (GCA_000001635.9), release 116Coordinates are one-based with both ends included, as each source reports them.

Also known as

EAP, Akp5, Alpg, D1Ertd816e

Gene identity, from NCBI Datasets · NCBI Datasets 18.38.0 · read 2026-10-01 ET · MGI:108009Data from NCBI, provided as is; NCBI's policies and disclaimers apply.

RefSeq transcripts of this gene
Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_007433.3matches ENSMUST00000027455.13	none given	protein coding	RefSeq Select	11	2,113 nt	529 aaNP_031459.3	Ready in a moment
XM_011247904.3	transcript variant X2	protein coding model	none	12	2,101 nt	529 aaXP_011246206.1	Ready in a moment
XM_006529082.3	transcript variant X1	protein coding model	none	12	2,016 nt	529 aaXP_006529145.1	Ready in a moment

Accession

Name

Biotype

Labels

Exons

Spliced length

Protein

Sequence

NM_007433.3matches ENSMUST00000027455.13

none given

protein coding

RefSeq Select

2,113 nt

529 aaNP_031459.3

Ready in a moment

XM_011247904.3

transcript variant X2

protein coding model

none

2,101 nt

529 aaXP_011246206.1

Ready in a moment

XM_006529082.3

transcript variant X1

protein coding model

none

2,016 nt

529 aaXP_006529145.1

Ready in a moment

From Alppl2 to a sequence that silences it

Choose the region

A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.

Cover the isoforms you mean

An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.

Think across species early

The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.

Check expression in your model

A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.

Run the controls

A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.

Pick the product

AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

For research use only. Not for use in diagnostic or therapeutic procedures.

RefSeq transcripts of this gene
Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_007433.3matches ENSMUST00000027455.13	none given	protein coding	RefSeq Select	11	2,113 nt	529 aaNP_031459.3	Ready in a moment
XM_011247904.3	transcript variant X2	protein coding model	none	12	2,101 nt	529 aaXP_011246206.1	Ready in a moment
XM_006529082.3	transcript variant X1	protein coding model	none	12	2,016 nt	529 aaXP_006529145.1	Ready in a moment

Accession

Name

Biotype

Labels

Exons

Spliced length

Protein

Sequence

NM_007433.3matches ENSMUST00000027455.13

none given

protein coding

RefSeq Select

2,113 nt

529 aaNP_031459.3

Ready in a moment

XM_011247904.3

transcript variant X2

protein coding model

none

2,101 nt

529 aaXP_011246206.1

Ready in a moment

XM_006529082.3

transcript variant X1

protein coding model

none

2,016 nt

529 aaXP_006529145.1

Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
ENSMUST00000027455.13	Alppl2-201	protein coding	Ensembl canonical	11	2,092 nt	529 aaENSMUSP00000027455.7	Ready in a moment
ENSMUST00000188310.3	Alppl2-202	protein coding	none	12	2,017 nt	529 aaENSMUSP00000139887.2	Ready in a moment
ENSMUST00000190082.2	Alppl2-203	retained intron	none	3	644 nt	none	Ready in a moment

Alppl2

What Alppl2 does

The RNA a design targets

Where Alppl2 is expressed

The protein Alppl2 encodes

Proteins STRING associates with Alppl2

Where Alppl2 acts, as Reactome curates it

Diseases linked to Alppl2

Classified variants of Alppl2

How much variation Alppl2 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Alppl2

Long non-coding RNAs at the Alppl2 locus

Papers that mention Alppl2

From Alppl2 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Alppl2

What Alppl2 does

The RNA a design targets

Where Alppl2 is expressed

The protein Alppl2 encodes

Proteins STRING associates with Alppl2

Where Alppl2 acts, as Reactome curates it

Diseases linked to Alppl2

Classified variants of Alppl2

How much variation Alppl2 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Alppl2

Long non-coding RNAs at the Alppl2 locus

Papers that mention Alppl2

Alppl2

What Alppl2 does

Gene summary

Protein function

The RNA a design targets

RefSeq 3 transcripts

A window on one transcript

Ensembl 3 transcripts

A window on one transcript

Where Alppl2 is expressed

The protein Alppl2 encodes

Proteins STRING associates with Alppl2

Where Alppl2 acts, as Reactome curates it

Diseases linked to Alppl2

Classified variants of Alppl2

How much variation Alppl2 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Alppl2

Long non-coding RNAs at the Alppl2 locus

Papers that mention Alppl2

From Alppl2 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 3 transcripts

A window on one transcript

Ensembl 3 transcripts

A window on one transcript