Gene Mouse Mus musculus

Sec11c

SEC11 homolog C, signal peptidase complex subunit

protein coding

HGNC and MANE Select: not available for mouse. HGNC names human genes; MGI is the authority here, and MANE Select is defined for human transcripts only.

Location: Cytogenetic band 18 E1NCBI: 18:65,933,649-65,950,731 on the plus strand, GRCm39 (GCF_000001635.27), sequence NC_000084.7, annotation GCF_000001635.27-RS_2024_02 of 2024-02-01Ensembl: no location was read.Coordinates are one-based with both ends included, as each source reports them.
Also known as: Sec11l3, 1810029G24Rik

Gene identity, from NCBI Datasets · NCBI Datasets 18.38.0 · read 2026-09-30 ET · MGI:1913536Data from NCBI, provided as is; NCBI's policies and disclaimers apply.

Notes from the sources

Ensembl did not answer (upstream error).
Ensembl did not answer (upstream error); the Ensembl location and release are missing

Silence this gene

The order page opens with Sec11c and mouse filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for Sec11c

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants

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Ready in a moment

01 Summary and function

What Sec11c does

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Ready in a moment

03 Expression by tissue

Where Sec11c is expressed

Ready in a moment

14 Silencing this gene

From Sec11c to a sequence that silences it

The AUMsilence platform designs the sequences against the mouse transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.

Gene Mouse Mus musculus

Sec11c

Reading the record for Sec11c from NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for Sec11c opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What Sec11c does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where Sec11c is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein Sec11c encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with Sec11c

Waiting for the record before reading STRING.

06 Pathways

Where Sec11c acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to Sec11c

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of Sec11c

Waiting for the record before reading ClinVar.

09 Constraint

How much variation Sec11c tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within Sec11c

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the Sec11c locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention Sec11c

Waiting for the record before reading Europe PMC.

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_025468.2matches ENSMUST00000025394.14	none given	protein coding	RefSeq Select	6	770 nt	192 aaNP_079744.1	Ready in a moment
XM_006526150.3	transcript variant X1	protein coding model	none	6	1,152 nt	154 aaXP_006526213.1	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_025468.2matches ENSMUST00000025394.14	none given	protein coding	RefSeq Select	6	770 nt	192 aaNP_079744.1	Ready in a moment
XM_006526150.3	transcript variant X1	protein coding model	none	6	1,152 nt	154 aaXP_006526213.1	Ready in a moment

Sec11c

What Sec11c does

The RNA a design targets

Where Sec11c is expressed

From Sec11c to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Sec11c

What Sec11c does

The RNA a design targets

Where Sec11c is expressed

The protein Sec11c encodes

Proteins STRING associates with Sec11c

Where Sec11c acts, as Reactome curates it

Diseases linked to Sec11c

Classified variants of Sec11c

How much variation Sec11c tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Sec11c

Long non-coding RNAs at the Sec11c locus

Papers that mention Sec11c

Sec11c

What Sec11c does

Gene summary

Protein function

The RNA a design targets

RefSeq 2 transcripts

A window on one transcript

Ensembl 0 transcripts

Where Sec11c is expressed

From Sec11c to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

The protein Sec11c encodes

Proteins STRING associates with Sec11c

Where Sec11c acts, as Reactome curates it

Diseases linked to Sec11c

Classified variants of Sec11c

How much variation Sec11c tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Sec11c

Long non-coding RNAs at the Sec11c locus

Papers that mention Sec11c

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 2 transcripts

A window on one transcript

Ensembl 0 transcripts