Gene Rat Rattus norvegicus

Btla

B and T lymphocyte associated

protein coding

HumanMouseRat Btla

Reading the ortholog votes for human and mouse.

HGNC and MANE Select: not available for rat. HGNC names human genes; RGD is the authority here, and MANE Select is defined for human transcripts only.

Location: Cytogenetic band 11q21NCBI: 11:69,069,734-69,102,544 on the minus strand, GRCr8 (GCF_036323735.1), sequence NC_086029.1, annotation GCF_036323735.1-RS_2026_08 of 2026-08-17Ensembl: 11:69,052,644-69,093,224 on the minus strand, GRCr8 (GCA_036323735.1), release 116Coordinates are one-based with both ends included, as each source reports them.

Gene identity, from NCBI Datasets · NCBI Datasets 18.38.0 · read 2026-09-29 ET · RGD:1303280Data from NCBI, provided as is; NCBI's policies and disclaimers apply.

Silence this gene

The order page opens with Btla and rat filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for Btla

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants
Constraint
Orthologs
MicroRNAs
Long non-coding RNAs
Literature
Silencing this gene

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Ready in a moment

01 Summary and function

What Btla does

Predicted to enable signaling receptor activity.

NCBI Gene summary

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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03 Expression by tissue

Where Btla is expressed

Expression by tissue: not available for rat. GTEx holds human tissues only, and the Human Protein Atlas is keyed on human genes.

Ready in a moment

04 Protein

The protein Btla encodes

Reading UniProt, InterPro, AlphaFold DB and PDBe.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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05 Interactions

Proteins STRING associates with Btla

Reading STRING.Still reading. A first read of a gene can take a while; this page waits up to 50 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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06 Pathways

Where Btla acts, as Reactome curates it

Reading UniProt and Reactome.Still reading. A first read of a gene can take a while; this page waits up to 60 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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07 Disease associations

Diseases linked to Btla

Disease associations: not available for rat. Open Targets and ClinGen curate human genes only. The human ortholog's page carries the associations.

Ready in a moment

08 Variants

Classified variants of Btla

Clinical variants: not available for rat. ClinVar holds human variants only.

Ready in a moment

09 Constraint

How much variation Btla tolerates

Constraint: not available for rat. gnomAD and Open Targets carry constraint for human genes only.

Ready in a moment

10 Orthologs

The same gene in mouse, rat and human

Reading the Alliance, NCBI, Ensembl Compara and RGD.Still reading. A first read of a gene can take a while; this page waits up to 145 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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11 MicroRNAs

MicroRNAs hosted within Btla

Reading Ensembl and miRBase.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

12 Long non-coding RNAs

Long non-coding RNAs at the Btla locus

Reading Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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13 Literature

Papers that mention Btla

Reading Europe PMC.Still reading. A first read of a gene can take a while; this page waits up to 55 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

14 Silencing this gene

From Btla to a sequence that silences it

The AUMsilence platform designs the sequences against the rat transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

Order for Btla Bring your own sequence The usage guide Selection guide

For research use only. Not for use in diagnostic or therapeutic procedures.

Gene Rat Rattus norvegicus

Btla

Reading the record for Btla from NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for Btla opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What Btla does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where Btla is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein Btla encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with Btla

Waiting for the record before reading STRING.

06 Pathways

Where Btla acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to Btla

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of Btla

Waiting for the record before reading ClinVar.

09 Constraint

How much variation Btla tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within Btla

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the Btla locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention Btla

Waiting for the record before reading Europe PMC.

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_213630.2matches ENSRNOT00000093151.3	none given	protein coding	RefSeq Select	6	3,354 nt	308 aaNP_998795.2	Ready in a moment
XM_087635849.1	transcript variant X5	protein coding model	none	8	3,601 nt	308 aaXP_087491975.1	Ready in a moment
XM_006248341.6	transcript variant X6	protein coding model	none	6	3,522 nt	307 aaXP_006248403.1	Ready in a moment
XM_087635846.1	transcript variant X2	protein coding model		Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_213630.2matches ENSRNOT00000093151.3	none given	protein coding	RefSeq Select	6	3,354 nt	308 aaNP_998795.2	Ready in a moment
XM_087635849.1	transcript variant X5	protein coding model	none	8	3,601 nt	308 aaXP_087491975.1	Ready in a moment
XM_006248341.6	transcript variant X6	protein coding model	none	6	3,522 nt	307 aaXP_006248403.1	Ready in a moment
XM_087635846.1	transcript variant X2	protein coding model		Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
ENSRNOT00000126072.1	Btla-204	protein coding	Ensembl canonical	7	1,192 nt	329 aaENSRNOP00000105522.1	Ready in a moment
ENSRNOT00000093151.3	Btla-203	protein coding	none	6	3,354 nt	308 aaENSRNOP00000076251.2	Ready in a moment
ENSRNOT00000083124.3	Btla-202	protein coding	none	5	3,195 nt	255 aaENSRNOP00000070838.1	Ready in a moment
ENSRNOT00000050092.6	Btla-201	protein coding	none	4	3,159 nt	243 aaENSRNOP00000050172.3	Ready in a moment

Btla

What Btla does

The RNA a design targets

Where Btla is expressed

The protein Btla encodes

Proteins STRING associates with Btla

Where Btla acts, as Reactome curates it

Diseases linked to Btla

Classified variants of Btla

How much variation Btla tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Btla

Long non-coding RNAs at the Btla locus

Papers that mention Btla

From Btla to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Btla

What Btla does

The RNA a design targets

Where Btla is expressed

The protein Btla encodes

Proteins STRING associates with Btla

Where Btla acts, as Reactome curates it

Diseases linked to Btla

Classified variants of Btla

How much variation Btla tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Btla

Long non-coding RNAs at the Btla locus

Papers that mention Btla

Btla

What Btla does

Gene summary

Protein function

The RNA a design targets

RefSeq 14 transcripts

A window on one transcript

Ensembl 4 transcripts

A window on one transcript

Where Btla is expressed

The protein Btla encodes

Proteins STRING associates with Btla

Where Btla acts, as Reactome curates it

Diseases linked to Btla

Classified variants of Btla

How much variation Btla tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Btla

Long non-coding RNAs at the Btla locus

Papers that mention Btla

From Btla to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 14 transcripts

A window on one transcript

Ensembl 4 transcripts

A window on one transcript