Gene Rat Rattus norvegicus

Mbd3

methyl-CpG binding domain protein 3

protein coding

HumanMouseRat Mbd3

Reading the ortholog votes for human and mouse.

HGNC and MANE Select: not available for rat. HGNC names human genes; RGD is the authority here, and MANE Select is defined for human transcripts only.

Location: Cytogenetic band 7q11NCBI: 7:9,963,703-9,970,845 on the plus strand, GRCr8 (GCF_036323735.1), sequence NC_086025.1, annotation GCF_036323735.1-RS_2026_08 of 2026-08-17Ensembl: 7:9,963,797-9,970,265 on the plus strand, GRCr8 (GCA_036323735.1), release 116Coordinates are one-based with both ends included, as each source reports them.

Gene identity, from NCBI Datasets · NCBI Datasets 18.37.0 · read 2026-09-25 ET · RGD:1307389Data from NCBI, provided as is; NCBI's policies and disclaimers apply.

Silence this gene

The order page opens with Mbd3 and rat filled in. The sequences are designed against the transcripts below; the price is on that page.

Order for Mbd3

sdASO, toASO or siRNA, chosen on the next page

Bring your own sequence Transcripts

For research use only. Not for use in diagnostic or therapeutic procedures.

Summary
Transcripts
Expression
Protein
Interactions
Pathways
Disease
Variants
Constraint
Orthologs
MicroRNAs
Long non-coding RNAs
Literature
Silencing this gene

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01 Summary and function

What Mbd3 does

Predicted to enable methyl-CpG binding activity. UniProt has 0 reviewed entries named Mbd3 in rat.

NCBI Gene summary

Ready in a moment

02 Transcripts and isoforms

The RNA a design targets

Reading NCBI Datasets and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 80 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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03 Expression by tissue

Where Mbd3 is expressed

Expression by tissue: not available for rat. GTEx holds human tissues only, and the Human Protein Atlas is keyed on human genes.

Ready in a moment

04 Protein

The protein Mbd3 encodes

UniProt did not give one reviewed entry for Mbd3 in rat, so InterPro, AlphaFold DB and PDBe were not asked and no protein entry is shown.

UniProt

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05 Interactions

Proteins STRING associates with Mbd3

Reading STRING.Still reading. A first read of a gene can take a while; this page waits up to 50 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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06 Pathways

Where Mbd3 acts, as Reactome curates it

UniProt did not give one reviewed entry for Mbd3 in rat, so Reactome was not asked and no pathway list is shown.

UniProt

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07 Disease associations

Diseases linked to Mbd3

Disease associations: not available for rat. Open Targets and ClinGen curate human genes only. The human ortholog's page carries the associations.

Ready in a moment

08 Variants

Classified variants of Mbd3

Clinical variants: not available for rat. ClinVar holds human variants only.

Ready in a moment

09 Constraint

How much variation Mbd3 tolerates

Constraint: not available for rat. gnomAD and Open Targets carry constraint for human genes only.

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10 Orthologs

The same gene in mouse, rat and human

Reading the Alliance, NCBI, Ensembl Compara and RGD.Still reading. A first read of a gene can take a while; this page waits up to 145 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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11 MicroRNAs

MicroRNAs hosted within Mbd3

Reading Ensembl and miRBase.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

Ready in a moment

12 Long non-coding RNAs

Long non-coding RNAs at the Mbd3 locus

Reading Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 110 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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13 Literature

Papers that mention Mbd3

Reading Europe PMC.Still reading. A first read of a gene can take a while; this page waits up to 55 seconds for it, and its scripts then bring in this line, or a line saying what did not arrive.

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14 Silencing this gene

From Mbd3 to a sequence that silences it

The AUMsilence platform designs the sequences against the rat transcripts on this page. Six decisions are yours before it does. What is written under each is AUM's guidance; the timings and the concentrations are in the usage guide below.

01
Choose the region
A knockdown oligonucleotide can sit in the 5' untranslated region, the coding sequence or the 3' untranslated region, and all three are used. The coding sequence and the 3' untranslated region are the usual first choices for an RNase H design; the 5' end near the start codon suits a steric block. The map above shows where each region sits on the isoforms it draws.
02
Cover the isoforms you mean
An exon every isoform carries silences the whole gene; an exon only some isoforms carry silences those and spares the rest. Decide which you want before a sequence is chosen, and check the reference transcript (MANE Select in human; RefSeq Select and Ensembl canonical in mouse and rat) is the one your cells express.
03
Think across species early
The orthologs panel says whether mouse and rat carry the same gene. Whether one oligonucleotide can serve two species is a sequence question, settled at design by matching the candidate against each transcript, not by the protein identity shown there.
04
Check expression in your model
A transcript that is not expressed in your cells cannot show knockdown. Confirm the gene is expressed in the cell type and condition you will use, from your own data or a reference atlas, before the order. The expression panel above gives GTEx's median per tissue for a human gene; for mouse and rat it says that no atlas is on this page yet.
05
Run the controls
A scramble control of the same chemistry, a positive control against a gene known to knock down in your cells, untreated cells, and a mock condition where a transfection reagent is used. Read knockdown at the RNA level first, then at the protein; the usage guide gives the timing and the concentrations to start from.
06
Pick the product
AUMsilence sdASO needs no transfection reagent and works in the cells that resist one. AUMsilence toASO is the transfection-optimised version of the same design, and AUMsiRNA is the siRNA route. The selection guide compares them.

Order for Mbd3 Bring your own sequence The usage guide Selection guide

For research use only. Not for use in diagnostic or therapeutic procedures.

Gene Rat Rattus norvegicus

Mbd3

Reading the record for Mbd3 from NCBI Gene and Ensembl.Still reading. A first read of a gene can take a while; this page waits up to 115 seconds for it, and its scripts then bring in the page, or a line saying what did not arrive.

The full name, the identifiers, the location and the notes from the sources arrive with the record. Nothing is filled in ahead of it.

Order door

The door to order for Mbd3 opens with the record, which decides which product it carries. The order page itself is open now.

Bring your own sequence

For research use only. Not for use in diagnostic or therapeutic procedures.

This page is still reading the record. Its scripts replace this shell with the record when it arrives; with scripts off, it stays at this shell however long you wait.

01 Summary and function

What Mbd3 does

Waiting for the record before reading NCBI Gene and UniProt.

02 Transcripts and isoforms

The RNA a design targets

Waiting for the record before reading NCBI Datasets and Ensembl.

03 Expression by tissue

Where Mbd3 is expressed

Waiting for the record before reading GTEx and the Human Protein Atlas.

04 Protein

The protein Mbd3 encodes

Waiting for the record before reading UniProt, InterPro, AlphaFold DB and PDBe.

05 Interactions

Proteins STRING associates with Mbd3

Waiting for the record before reading STRING.

06 Pathways

Where Mbd3 acts, as Reactome curates it

Waiting for the record before reading UniProt and Reactome.

07 Disease associations

Diseases linked to Mbd3

Waiting for the record before reading Open Targets and ClinGen.

08 Variants

Classified variants of Mbd3

Waiting for the record before reading ClinVar.

09 Constraint

How much variation Mbd3 tolerates

Waiting for the record before reading gnomAD and Open Targets.

10 Orthologs

The same gene in mouse, rat and human

Waiting for the record before reading the Alliance, NCBI, Ensembl Compara and RGD.

11 MicroRNAs

MicroRNAs hosted within Mbd3

Waiting for the record before reading Ensembl and miRBase.

12 Long non-coding RNAs

Long non-coding RNAs at the Mbd3 locus

Waiting for the record before reading Ensembl.

13 Literature

Papers that mention Mbd3

Waiting for the record before reading Europe PMC.

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001439497.1	transcript variant 1	protein coding	RefSeq Select	7	1,598 nt	286 aaNP_001426426.1	Ready in a moment
XM_087623554.1	transcript variant X3	protein coding model	none	7	4,353 nt	230 aaXP_087479680.1	Ready in a moment
XM_087623556.1	transcript variant X4	protein coding model	none	8	1,749 nt	230 aaXP_087479682.1	Ready in a moment
NM_001439500.1matches ENSRNOT00000049170.7	transcript variant 4	protein coding	none	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
NM_001439497.1	transcript variant 1	protein coding	RefSeq Select	7	1,598 nt	286 aaNP_001426426.1	Ready in a moment
XM_087623554.1	transcript variant X3	protein coding model	none	7	4,353 nt	230 aaXP_087479680.1	Ready in a moment
XM_087623556.1	transcript variant X4	protein coding model	none	8	1,749 nt	230 aaXP_087479682.1	Ready in a moment
NM_001439500.1matches ENSRNOT00000049170.7	transcript variant 4	protein coding	none	Ready in a moment

Accession	Name	Biotype	Labels	Exons	Spliced length	Protein	Sequence
ENSRNOT00000049170.7	Mbd3-201	protein coding	Ensembl canonical	6	1,094 nt	314 aaENSRNOP00000041242.7	Ready in a moment
ENSRNOT00000100050.2	Mbd3-202	protein coding	none	7	949 nt	266 aaENSRNOP00000094795.2	Ready in a moment

Mbd3

What Mbd3 does

The RNA a design targets

Where Mbd3 is expressed

The protein Mbd3 encodes

Proteins STRING associates with Mbd3

Where Mbd3 acts, as Reactome curates it

Diseases linked to Mbd3

Classified variants of Mbd3

How much variation Mbd3 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Mbd3

Long non-coding RNAs at the Mbd3 locus

Papers that mention Mbd3

From Mbd3 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Mbd3

What Mbd3 does

The RNA a design targets

Where Mbd3 is expressed

The protein Mbd3 encodes

Proteins STRING associates with Mbd3

Where Mbd3 acts, as Reactome curates it

Diseases linked to Mbd3

Classified variants of Mbd3

How much variation Mbd3 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Mbd3

Long non-coding RNAs at the Mbd3 locus

Papers that mention Mbd3

Mbd3

What Mbd3 does

Gene summary

Protein function

The RNA a design targets

RefSeq 9 transcripts

A window on one transcript

Ensembl 2 transcripts

A window on one transcript

Where Mbd3 is expressed

The protein Mbd3 encodes

Proteins STRING associates with Mbd3

Where Mbd3 acts, as Reactome curates it

Diseases linked to Mbd3

Classified variants of Mbd3

How much variation Mbd3 tolerates

The same gene in mouse, rat and human

MicroRNAs hosted within Mbd3

Long non-coding RNAs at the Mbd3 locus

Papers that mention Mbd3

From Mbd3 to a sequence that silences it

Choose the region

Cover the isoforms you mean

Think across species early

Check expression in your model

Run the controls

Pick the product

Gene summary

Protein function

RefSeq 9 transcripts

A window on one transcript

Ensembl 2 transcripts

A window on one transcript