Disease or phenotype Orphanet
Rare genetic developmental defect during embryogenesis
Orphanet_183530 in Open Targets Platform 26.06, filed under genetic, familial or congenital disease. The targets below are ranked by the Platform's association score, which the Platform says is not a confidence score; the ClinGen card is a separate question, whether variation in a gene causes a monogenic disease.
Which targets
Indirect is the Platform's own default when listing a disease's targets: the evidence of the term's ontology descendants counts. Direct counts the evidence between the two terms alone. The page says which it shows.
01The term
About this term, from the Platform
What this tells you
The name, the therapeutic areas, the parents and the children in the strip are read from the disease dataset of Open Targets Platform 26.06, built into this site on 2026-09-09; the description, the synonyms and the ranked targets are read live from the Platform's API, which names the same release on every answer, and every figure on this page is the Platform's own.
What the entity is, in the Platform's words: A disease or phenotype in the Platform is understood as any disease, phenotype, biological process or measurement that might have any type of causality relationship with a human target. The EMBL-EBI Experimental Factor Ontology (EFO) is used as scaffold for the disease or phenotype entity.
[R16] So a measurement or a biological process has a page here like a disease, and the therapeutic areas in the strip say which kind of term it is. What a target is: A target in the Platform is understood as any naturally-occurring molecule that can be targeted by a medicinal product. EMBL-EBI's Ensembl database is used as source for human targets in the Platform, with the Ensembl gene ID as the primary identifier.
[R18]
The ranking is by the Platform's overall association score: The overall association score aims to summarise all the aggregated evidence for a given target-disease association. The score is derived by calculating the harmonic sum of the association score by data source weighted by the data source weights, regardless of their data type categorisation.
[R15] And what the score is not: While scores are useful to rank lists of targets or diseases, they should not be interpreted as a confidence score for the target-disease association.
[R15] For example, under-studied diseases are unlikely to produce high-scoring targets due to the lack of available evidence. In such diseases, a relatively low-scoring target might still be the top-ranked target and potentially a very interesting lead from a therapeutic standpoint.
[R15]
Two views, in the Platform's words. Direct: The Platform refers to associations described by aggregated evidence between two specific terms in our data sources as direct associations.
[R15] Indirect, the Platform's own default when listing the targets of a disease: An association page for targets associated with a disease (e.g. Inflammatory Bowel Disease associations page) includes both direct and indirect evidence.
[R15] One data type is never propagated: RNA expression data type evidence is not propagated in the ontology. We made this decision to prevent parent terms from having long lists of associated targets with weak RNA expression association scores.
[R15]
The data are public domain, Open Targets Platform is marked with CC0 1.0. This dedicates the data to the public domain, allowing downstream users to consume the data without restriction.
[R14] and the Platform asks that its latest publication be cited [R17], which is [R03].
A target high on this list is a gene the Platform's sources associate with this term by the Platform's arithmetic over their evidence; choosing a knockdown target from it means reading the evidence behind the row on the Platform's own page, which each row links to, and the order of two rows that share a score can differ between requests, which the page says when it happens.
- [R03] Buniello A, Suveges D, Cruz-Castillo C, Llinares MB, Cornu H, Lopez I, et al. (2025). Open Targets Platform: facilitating therapeutic hypotheses building in drug discovery. Nucleic Acids Research 53:D1467-D1475. PMID 39657122, doi 10.1093/nar/gkae1128.
- [R14] Open Targets Platform Documentation. Licence. https://platform-docs.opentargets.org/licence, read 2026-09-09.
- [R15] Open Targets Platform Documentation. Target-disease associations. https://platform-docs.opentargets.org/associations, read 2026-09-09.
- [R16] Open Targets Platform Documentation. Disease or Phenotype. https://platform-docs.opentargets.org/disease-or-phenotype, read 2026-09-09.
- [R17] Open Targets Platform Documentation. Citation. https://platform-docs.opentargets.org/citation, read 2026-09-09.
- [R18] Open Targets Platform Documentation. Target. https://platform-docs.opentargets.org/target, read 2026-09-09.
02Ranked targets
Targets the Platform ranks for this term, indirect view
03ClinGen
Gene-disease validity curations for this MONDO term
What this tells you
The curations are read from ClinGen's gene-disease validity download, keyed on the MONDO term Open Targets writes for this entity after an exact character translation and never after a search; a term of another ontology has no counterpart in that file, and the card says so. Each row shows which of ClinGen's classifications it carries, with the procedure version and the date it was made under; nothing here ranks the classifications.
What a classification is about, in ClinGen's words: The ClinGen Gene-Disease Clinical Validity curation process involves evaluating the strength of evidence supporting or refuting a claim that variation in a particular gene causes a particular monogenic disease.
[R20] And what the process is not: This curation process is not intended to be a systematic review of all available literature for a given gene or condition, but instead an overview of the most pertinent evidence required to assign the appropriate classification for a gene-disease relationship at a given time.
[R21]
The classification vocabulary is the 8 values ClinGen's own results table lists in its Classification filter control, in the control's own alphabetical order [R23]: Animal Model Only, Definitive, Disputed, Limited, Moderate, No Known Disease Relationship, Refuted, Strong. The order is the control's and carries no strength: nothing here ranks the values, and a value outside that set is shown as the file writes it and marked as unlisted, never mapped to a neighbour. The definitions of the values are in the standard operating procedure, which ClinGen publishes as a document [R22]; this site has not read that document, so no definition is stated here, and the framework paper the procedure rests on is [R06]. Each row carries the procedure version it was made under, as the table does, because rows made under different versions sit side by side.
ClinGen's curated content is public domain: All curated content published by ClinGen is available free of restriction under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. However, ClinGen requests that you give attribution to ClinGen and provide the date accessed whenever possible and appropriate.
[R19] The attribution in the card's provenance line follows ClinGen's own example statement, and no logo is shown: The ClinGen logo cannot be used without prior approval of the ClinGen Steering Committee.
[R19] ClinGen asks that its marker paper [R04] and its 2024 consortium paper [R05] be cited.
A ClinGen classification is a statement about whether variation in a gene causes a monogenic disease. It is not a statement about whether the gene is a knockdown target, and it is not a rank beside the Platform's score above it.
- [R04] Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, et al. (2015). ClinGen--the Clinical Genome Resource. N Engl J Med 372:2235-2242. PMID 26014595, doi 10.1056/NEJMsr1406261.
- [R05] ClinGen Consortium (2025). The Clinical Genome Resource (ClinGen): Advancing genomic knowledge through global curation. Genet Med 27:101228. PMID 39404758, doi 10.1016/j.gim.2024.101228.
- [R06] Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, et al. (2017). Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource. Am J Hum Genet 100:895-906. PMID 28552198, doi 10.1016/j.ajhg.2017.04.015.
- [R19] ClinGen, Clinical Genome Resource. Citing ClinGen & Terms of Use. https://clinicalgenome.org/docs/terms-of-use/, read 2026-09-09.
- [R20] ClinGen, Clinical Genome Resource. Gene-Disease Validity. https://clinicalgenome.org/curation-activities/gene-disease-validity/, read 2026-09-09.
- [R21] ClinGen, Clinical Genome Resource. Gene-Disease Validity Standard Operating Procedure. https://clinicalgenome.org/docs/gene-disease-validity-standard-operating-procedure/, read 2026-09-09.
- [R22] ClinGen, Clinical Genome Resource. Gene-Disease Validity Standard Operating Procedures, Version 12. https://clinicalgenome.org/docs/gene-disease-validity-standard-operating-procedures-version-12/, read 2026-09-09.
- [R23] ClinGen, Clinical Genome Resource. ClinGen Gene-Disease Validity Curations. https://search.clinicalgenome.org/kb/gene-validity, read 2026-09-09.
Not available
04The ontology
Where the release places this term
Children
- Aymé-Gripp syndromeEFO_0009020
- Macrocephaly-intellectual disability-neurodevelopmental disorder-small thorax syndromeEFO_0009050
- TELO2-related intellectual disability-neurodevelopmental disorderEFO_0009061
- Temple-Baraitser syndromeEFO_0009062
- Taussig-Bing syndromeOrphanet_101042
- Situs inversus totalisOrphanet_101063
- Anonychia - microcephalyOrphanet_1094
- Anophthalmia - megalocornea - cardiopathy - skeletal anomaliesOrphanet_1101
- Aortic arch anomaly - peculiar facies - intellectual disabilityOrphanet_1110
- Caudal appendage - deafnessOrphanet_1123
- Arachnodactyly - abnormal ossification - intellectual disabilityOrphanet_1129
- Arrhinia - choanal atresia - microphthalmiaOrphanet_1135
- Choanal atresia-deafness-cardiac defects-dysmorphism syndromeOrphanet_1200
- Brachydactyly - nystagmus - cerebellar ataxiaOrphanet_1246
- Dermato-cardio-skeletal syndrome, Borrone typeOrphanet_1266
- Brachydactyly - mesomelia - intellectual disability - heart defectsOrphanet_1277
- Branchio-skeleto-genital syndromeOrphanet_1299
- Cantrell pentalogyOrphanet_1335
- Heart defect-tongue hamartoma-polysyndactyly syndromeOrphanet_1338
- Heart defects - limb shorteningOrphanet_1354
- Heart defect - round face - congenital developmental delayOrphanet_1355
- Congenital cataract - hypertrophic cardiomyopathy - mitochondrial myopathyOrphanet_1369
- Capillary malformation - arteriovenous malformationOrphanet_137667
- Cataract - deafness - hypogonadismOrphanet_1383
- Cortical blindness - intellectual disability - polydactylyOrphanet_1389
- Night blindness - skeletal anomalies - dysmorphismOrphanet_1390
- Malformation syndrome with skin/mucosae involvementOrphanet_139027
- Malformation syndrome with connective tissue involvementOrphanet_139030
- Isolated CoQ-cytochrome C reductase deficiencyOrphanet_1460
- Craniodigital syndrome - intellectual disabilityOrphanet_1514
- Cryptomicrotia - brachydactyly - excess fingertip archOrphanet_1547
- Cryptorchidism - arachnodactyly - intellectual disabilityOrphanet_1548
- Facial dysmorphism - shawl scrotum - joint laxityOrphanet_1778
- Epiphyseal dysplasia - hearing loss - dysmorphismOrphanet_1825
- Genetic central nervous system malformationOrphanet_183506
- Genetic congenital limb malformationOrphanet_183536
- Genetic renal or urinary tract malformationOrphanet_183539
- Genetic cranial malformationOrphanet_183542
- Genetic digestive tract malformationOrphanet_183545
- Genetic visceral malformation of the liver, biliary tract, pancreas or spleenOrphanet_183548
- Genetic respiratory or mediastinal malformationOrphanet_183554
- Genetic developmental defect of the eyeOrphanet_183557
- Genetic malformation syndrome with short statureOrphanet_183570
- Genetic overgrowth/obesity syndromeOrphanet_183573
- Genetic branchial arch or oral-acral syndromeOrphanet_183576
- Genetic malformation syndrome with odontal and/or periodontal componentOrphanet_183580
- Epilepsy - microcephaly - skeletal dysplasiaOrphanet_1948
- Epilepsy telangiectasiaOrphanet_1951
- 15q13.3 microdeletion syndromeOrphanet_199318
- Alar cartilages hypoplasia - coloboma - telecanthusOrphanet_2007
- Posterior fusion of lumbosacral vertebrae - blepharoptosisOrphanet_2064
- Prominent glabella - microcephaly - hypogenitalismOrphanet_2083
- Multinodular goiter - cystic kidney - polydactylyOrphanet_2091
- Diaphragmatic defect - limb deficiency - skull defectOrphanet_2141
- Holoprosencephaly - postaxial polydactylyOrphanet_2166
- Microcephaly - glomerulonephritis - marfanoid habitusOrphanet_2172
- 17q21.31 microduplication syndromeOrphanet_217340
- 19q13.11 microdeletion syndromeOrphanet_217346
- Microduplication Xp11.22-p11.23 syndromeOrphanet_217377
- 17p13.3 microduplication syndromeOrphanet_217385
- Hydrocephaly - tall stature - joint laxityOrphanet_2181
- Hypertelorism - hypospadias - polysyndactyly syndromeOrphanet_2211
- Male hypergonadotropic hypogonadism - intellectual disability - skeletal anomaliesOrphanet_2234
- Radial hypoplasia - triphalangeal thumbs - hypospadias - maxillary diastemaOrphanet_2252
- Hypospadias - intellectual disability, Goldblatt typeOrphanet_2261
- Sanjad-Sakati syndromeOrphanet_2323
- Hypotonia - cystinuria type 1Orphanet_238517
- Ptosis - syndactyly - learning difficultiesOrphanet_238766
- Dislocation of the hip - dysmorphismOrphanet_2412
- Macrocephaly - short stature - paraplegiaOrphanet_2427
- Macrocephaly - spastic paraplegia - dysmorphismOrphanet_2429
- Split hand - urinary anomalies - spina bifidaOrphanet_2437
- Mitochondrial oxidative phosphorylation disorder due to nuclear DNA anomaliesOrphanet_2443
- Mucocutaneous venous malformationsOrphanet_2451
- Marfanoid habitus - intellectual disability, autosomal recessiveOrphanet_2463
- Upper limb defect - eye and ear abnormalitiesOrphanet_2489
- Müllerian duct anomalies - limb anomaliesOrphanet_2491
- Micro syndromeOrphanet_2510
- Microcephaly - albinism - digital anomaliesOrphanet_2513
- Microcephaly - cardiac defect - lung malsegmentationOrphanet_2516
- Microcephaly - seizures - intellectual disability - heart diseaseOrphanet_2519
- Microcephaly - deafness - intellectual disabilityOrphanet_2533
- Mitochondrial oxidative phosphorylation disorder due to mitochondrial DNA anomaliesOrphanet_254758
- Unspecified mitochondrial disorderOrphanet_254837
- Isolated cytochrome C oxidase deficiencyOrphanet_254905
- Isolated ATP synthase deficiencyOrphanet_254913
- Adult-onset autosomal recessive sideroblastic anemiaOrphanet_255132
- 14q22q23 microdeletion syndromeOrphanet_264200
- Dwarfism - intellectual disability - eye abnormalityOrphanet_2650
- Ophthalmoplegia - intellectual disability - lingua scrotalisOrphanet_2743
- Paraplegia - intellectual disability - hyperkeratosisOrphanet_2824
- Short tarsus - absence of lower eyelashesOrphanet_2832
- 8q21.11 microdeletion syndromeOrphanet_284160
- Short stature - webbed neck - heart diseaseOrphanet_2865
- Short stature - valvular heart disease - characteristic faciesOrphanet_2868
- Preaxial polydactyly - colobomata - intellectual disabilityOrphanet_2921
- Polysyndactyly - cardiac malformationOrphanet_2934
- Blepharophimosis-intellectual disability syndromeOrphanet_293642
- Pterygium colli - intellectual disability - digital anomaliesOrphanet_2988
- Short stature - craniofacial anomalies - genital hypoplasiaOrphanet_2994
- Baraitser-Winter syndromeOrphanet_2995
- Delayed speech - facial asymmetry - strabismus - ear lobe creasesOrphanet_3038
- Intellectual disability - dysmorphism - hypogonadism - diabetes mellitusOrphanet_3044
- intellectual disability - sparse hair - brachydactylyOrphanet_3051
- Intellectual disability - short stature - hypertelorismOrphanet_3074
- Intellectual disability - polydactyly - uncombable hairOrphanet_3082
- Contractures-webbed neck-micrognathia-hypoplastic nipples syndromeOrphanet_314002
- Cerebro-facio-articular syndromeOrphanet_314679
- Deafness - genital anomalies - metacarpal and metatarsal synostosisOrphanet_3224
- Muscular hypertrophy - hepatomegaly - polyhydramniosOrphanet_324416
- Aphonia - deafness - retinal dystrophy - bifid halluces - intellectual disabilityOrphanet_324540
- Genetic disorder of sex developmentOrphanet_325690
- Intellectual disability - craniofacial dysmorphism - cryptorchidismOrphanet_329224
- Telecanthus - hypertelorism - strabismus - pes cavusOrphanet_3293
- 5p13 microduplication syndromeOrphanet_329802
- Genetic multiple congenital anomalies/dysmorphic syndrome - variable intellectual disabilityOrphanet_330197
- Fallot complex - intellectual disability - growth delayOrphanet_3304
- Trigonocephaly - bifid nose - acral anomaliesOrphanet_3368
- Severe feeding difficulties - failure to thrive - microcephaly due to ASXL3 deficiencyOrphanet_352577
- Epileptic encephalopathy with global cerebral demyelinationOrphanet_353217
- 19p13.13 microdeletion syndromeOrphanet_357001
- Short ulna - dysmorphism - hypotonia - intellectual disabilityOrphanet_357175
- 17q21.31 microdeletion syndromeOrphanet_363958
- Cardiac anomalies-developmental delay-facial dysmorphism syndromeOrphanet_369891
- Early infantile epileptic encephalopathy without suppression burstOrphanet_369894
- Congenital disorder of glycosylation with developmental anomalyOrphanet_371235
- Genetic neurovascular malformationOrphanet_371436
- Severe intellectual disability-short stature-behavioral troubles-facial dysmorphism syndromeOrphanet_391307
- Lipoic acid biosynthesis defectOrphanet_401854
- ADNP-related multiple congenital anomalies-intellectual disability-autism spectrum disorderOrphanet_404448
- Rare genetic bone development disorderOrphanet_404584
- LeprechaunismOrphanet_508
- Mohr-Tranebjaerg syndromeOrphanet_52368
- Branchio-otic syndromeOrphanet_52429
- X-linked creatine transporter deficiencyOrphanet_52503
- Multiple sulfatase deficiencyOrphanet_585
- Hyaluronidase deficiencyOrphanet_67041
- Visceral neuropathy - brain anomalies - facial dysmorphism - developmental delayOrphanet_73246
- Brain malformation - congenital heart disease - postaxial polydactylyOrphanet_75389
- Oculo-oto-facial dysplasiaOrphanet_77302
- Developmental malformations - deafness - dystoniaOrphanet_79107
- Agammaglobulinemia - microcephaly - craniosynostosis - severe dermatitisOrphanet_83617
- Macrostomia - preauricular tags - external ophthalmoplegiaOrphanet_83619
- X-linked intellectual disability, Abidi typeOrphanet_85273
- Microphthalmia - ankyloblepharon - intellectual disabilityOrphanet_85275
- Syndromic X-linked intellectual disability due to JARID1C mutationOrphanet_85279
- X-linked intellectual disability - cubitus valgus - dysmorphismOrphanet_85280
- X-linked intellectual disability, Shashi typeOrphanet_85286
- X-linked intellectual disability, Siderius typeOrphanet_85287
- X-linked intellectual disability, Vitale typeOrphanet_85289
- X-linked intellectual disability, Wittwer typeOrphanet_85291
- X-linked intellectual disability - hypogammaglobulinemia - progressive neurological deteriorationOrphanet_85317
- X-linked intellectual disability - epilepsy - progressive joint contractures - dysmorphismOrphanet_85319
- Deafness - intellectual disability, Martin-Probst typeOrphanet_85321
- Congenitally uncorrected transposition of the great arteriesOrphanet_860
- Alport syndrome - intellectual disability - midface hypoplasia - elliptocytosisOrphanet_86818
- Lymphedema - cleft palateOrphanet_86917
- sialidosis type IIOrphanet_87876
- Cardiomyopathy - hypotonia - lactic acidosisOrphanet_91130
- Osteopenia - myopia - hearing loss - intellectual disability - facial dysmorphismOrphanet_91133
- Zellweger syndromeOrphanet_912
- 15q24 microdeletion syndromeOrphanet_94065
- Severe intellectual disability - epilepsy - anal anomalies - distal phalangeal hypoplasiaOrphanet_94066
- Rare otorhinolaryngological malformationOrphanet_96333
- Malformation syndrome with hamartosisOrphanet_98196
- Agnathia - holoprosencephaly - situs inversusOrphanet_990
- Double outlet right ventricle with subaortic ventricular septal defectOrphanet_99044
- Double outlet right ventricle with doubly committed ventricular septal defectOrphanet_99047
- Gerbode defectOrphanet_99095
- Multiple ventricular septal defectsOrphanet_99096
- Single ventricular septal defectOrphanet_99097
- LIG4 syndromeOrphanet_99812
Therapeutic areas
- Open Targets Platform, the disease dataset · Open Targets Platform 26.06 · read · Open Targets PlatformOpen Targets Platform is marked with CC0 1.0. Citation requested: Buniello A et al., Nucleic Acids Research (2025), doi 10.1093/nar/gkae1128.