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Pathway Human Homo sapiens

Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation

R-HSA-163841 in Reactome release 97: under Post-translational protein modification, with 61 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-163841 (mouse), R-RNO-163841 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 61 genes in this human pathway; showing 1 to 61, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneARSAAuthorityHGNC:713Mapping file id410 NCBI fileEvidenceTAS
GeneARSBAuthorityHGNC:714Mapping file id411 NCBI fileEvidenceTAS
GeneARSDAuthorityHGNC:717Mapping file id414 NCBI fileEvidenceTAS
GeneARSFAuthorityHGNC:721Mapping file id416 NCBI fileEvidenceTAS
GeneARSGAuthorityHGNC:24102Mapping file id22901 NCBI fileEvidenceTAS
GeneARSHAuthorityHGNC:32488Mapping file id347527 NCBI fileEvidenceTAS
GeneARSIAuthorityHGNC:32521Mapping file id340075 NCBI fileEvidenceTAS
GeneARSJAuthorityHGNC:26286Mapping file id79642 NCBI fileEvidenceTAS
GeneARSKAuthorityHGNC:25239Mapping file id153642 NCBI fileEvidenceTAS
GeneARSLAuthorityHGNC:719Mapping file id415 NCBI fileEvidenceTAS
GeneASPHAuthorityHGNC:757Mapping file id444 NCBI fileEvidenceIEA
GeneBGLAPAuthorityHGNC:1043Mapping file id632 NCBI fileEvidenceTAS
GeneDHPSAuthorityHGNC:2869Mapping file id1725 NCBI fileEvidenceTAS
GeneDNAJC24AuthorityHGNC:26979Mapping file id120526 NCBI fileEvidenceTAS
GeneDOHHAuthorityHGNC:28662Mapping file id83475 NCBI fileEvidenceTAS
GeneDPH1AuthorityHGNC:3003Mapping file id1801 NCBI fileEvidenceTAS
GeneDPH2AuthorityHGNC:3004Mapping file id1802 NCBI fileEvidenceTAS
GeneDPH3AuthorityHGNC:27717Mapping file id285381 NCBI fileEvidenceTAS
GeneDPH5AuthorityHGNC:24270Mapping file id51611 NCBI fileEvidenceTAS
GeneDPH6AuthorityHGNC:30543Mapping file id89978 NCBI fileEvidenceTAS
GeneDPH7AuthorityHGNC:25199Mapping file id92715 NCBI fileEvidenceIEA
GeneDRG1AuthorityHGNC:3029Mapping file id4733 NCBI fileEvidenceTAS
GeneDRG2AuthorityHGNC:3030Mapping file id1819 NCBI fileEvidenceTAS
GeneEEF2AuthorityHGNC:3214Mapping file id1938 NCBI fileEvidenceIEA, TAS
GeneEIF5AAuthorityHGNC:3300Mapping file id1984 NCBI fileEvidenceTAS
GeneEIF5A2AuthorityHGNC:3301Mapping file id56648 NCBI fileEvidenceTAS
GeneETF1AuthorityHGNC:3477Mapping file id2107 NCBI fileEvidenceTAS
GeneF10AuthorityHGNC:3528Mapping file id2159 NCBI fileEvidenceTAS
GeneF2AuthorityHGNC:3535Mapping file id2147 NCBI fileEvidenceTAS
GeneF7AuthorityHGNC:3544Mapping file id2155 NCBI fileEvidenceTAS
GeneF8AuthorityHGNC:3546Mapping file id2157 NCBI fileEvidenceTAS
GeneF9AuthorityHGNC:3551Mapping file id2158 NCBI fileEvidenceIEA, TAS
GeneFN3KAuthorityHGNC:24822Mapping file id64122 NCBI fileEvidenceTAS
GeneFN3KRPAuthorityHGNC:25700Mapping file id79672 NCBI fileEvidenceTAS
GeneFURINAuthorityHGNC:8568Mapping file id5045 NCBI fileEvidenceTAS
GeneGAS6AuthorityHGNC:4168Mapping file id2621 NCBI fileEvidenceIEA, TAS
GeneGGCXAuthorityHGNC:4247Mapping file id2677 NCBI fileEvidenceIEA, TAS
GeneICMTAuthorityHGNC:5350Mapping file id23463 NCBI fileEvidenceTAS
GeneJMJD4AuthorityHGNC:25724Mapping file id65094 NCBI fileEvidenceTAS
GeneJMJD6AuthorityHGNC:19355Mapping file id23210 NCBI fileEvidenceTAS
GeneJMJD7AuthorityHGNC:34397Mapping file id100137047 NCBI fileEvidenceTAS
GeneKDM8AuthorityHGNC:25840Mapping file id79831 NCBI fileEvidenceTAS
GeneOGFOD1AuthorityHGNC:25585Mapping file id55239 NCBI fileEvidenceTAS
GenePROCAuthorityHGNC:9451Mapping file id5624 NCBI fileEvidenceTAS
GenePROS1AuthorityHGNC:9456Mapping file id5627 NCBI fileEvidenceTAS
GenePROZAuthorityHGNC:9460Mapping file id8858 NCBI fileEvidenceTAS
GeneRCCD1AuthorityHGNC:30457Mapping file id91433 NCBI fileEvidenceTAS
GeneRIOX1AuthorityHGNC:20968Mapping file id79697 NCBI fileEvidenceTAS
GeneRIOX2AuthorityHGNC:19441Mapping file id84864 NCBI fileEvidenceTAS
GeneRPL27AAuthorityHGNC:10329Mapping file id6157 NCBI fileEvidenceTAS
GeneRPL8AuthorityHGNC:10368Mapping file id6132 NCBI fileEvidenceTAS
GeneRPS23AuthorityHGNC:10410Mapping file id6228 NCBI fileEvidenceTAS
GeneRPS6AuthorityHGNC:10429Mapping file id6194 NCBI fileEvidenceTAS
GeneRWDD1AuthorityHGNC:20993Mapping file id51389 NCBI fileEvidenceTAS
GeneSTSAuthorityHGNC:11425Mapping file id412 NCBI fileEvidenceTAS
GeneSUMF1AuthorityHGNC:20376Mapping file id285362 NCBI fileEvidenceTAS
GeneSUMF2AuthorityHGNC:20415Mapping file id25870 NCBI fileEvidenceTAS
GeneTPST1AuthorityHGNC:12020Mapping file id8460 NCBI fileEvidenceTAS
GeneTPST2AuthorityHGNC:12021Mapping file id8459 NCBI fileEvidenceTAS
GeneU2AF2AuthorityHGNC:23156Mapping file id11338 NCBI fileEvidenceTAS
GeneZC3H15AuthorityHGNC:29528Mapping file id55854 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.