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Pathway Human Homo sapiens

Transcriptional Regulation by TP53

R-HSA-3700989 in Reactome release 97: under Generic Transcription Pathway, with 361 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3700989 (mouse), R-RNO-3700989 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 361 genes in this human pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 4
GeneAGO1AuthorityHGNC:3262Mapping file id26523 NCBI fileEvidenceTAS
GeneAGO2AuthorityHGNC:3263Mapping file id27161 NCBI fileEvidenceTAS
GeneAGO3AuthorityHGNC:18421Mapping file id192669 NCBI fileEvidenceTAS
GeneAGO4AuthorityHGNC:18424Mapping file id192670 NCBI fileEvidenceTAS
GeneAIFM2AuthorityHGNC:21411Mapping file id84883 NCBI fileEvidenceTAS
GeneAKT1AuthorityHGNC:391Mapping file id207 NCBI fileEvidenceTAS
GeneAKT2AuthorityHGNC:392Mapping file id208 NCBI fileEvidenceTAS
GeneAKT3AuthorityHGNC:393Mapping file id10000 NCBI fileEvidenceTAS
GeneAPAF1AuthorityHGNC:576Mapping file id317 NCBI fileEvidenceTAS
GeneARID3AAuthorityHGNC:3031Mapping file id1820 NCBI fileEvidenceTAS
GeneATF2AuthorityHGNC:784Mapping file id1386 NCBI fileEvidenceTAS
GeneATMAuthorityHGNC:795Mapping file id472 NCBI fileEvidenceTAS
GeneATRAuthorityHGNC:882Mapping file id545 NCBI fileEvidenceTAS
GeneATRIPAuthorityHGNC:33499Mapping file id84126 NCBI fileEvidenceTAS
GeneAURKAAuthorityHGNC:11393Mapping file id6790 NCBI fileEvidenceTAS
GeneAURKBAuthorityHGNC:11390Mapping file id9212 NCBI fileEvidenceTAS
GeneBANPAuthorityHGNC:13450Mapping file id54971 NCBI fileEvidenceTAS
GeneBARD1AuthorityHGNC:952Mapping file id580 NCBI fileEvidenceTAS
GeneBAXAuthorityHGNC:959Mapping file id581 NCBI fileEvidenceTAS
GeneBBC3AuthorityHGNC:17868Mapping file id27113 NCBI fileEvidenceTAS
GeneBCL2L14AuthorityHGNC:16657Mapping file id79370 NCBI fileEvidenceTAS
GeneBCL6AuthorityHGNC:1001Mapping file id604 NCBI fileEvidenceTAS
GeneBIDAuthorityHGNC:1050Mapping file id637 NCBI fileEvidenceTAS
GeneBIRC5AuthorityHGNC:593Mapping file id332 NCBI fileEvidenceTAS
GeneBLMAuthorityHGNC:1058Mapping file id641 NCBI fileEvidenceTAS
GeneBNIP3LAuthorityHGNC:1085Mapping file id665 NCBI fileEvidenceTAS
GeneBRCA1AuthorityHGNC:1100Mapping file id672 NCBI fileEvidenceTAS
GeneBRD1AuthorityHGNC:1102Mapping file id23774 NCBI fileEvidenceTAS
GeneBRD7AuthorityHGNC:14310Mapping file id29117 NCBI fileEvidenceTAS
GeneBRIP1AuthorityHGNC:20473Mapping file id83990 NCBI fileEvidenceTAS
GeneBRPF1AuthorityHGNC:14255Mapping file id7862 NCBI fileEvidenceTAS
GeneBRPF3AuthorityHGNC:14256Mapping file id27154 NCBI fileEvidenceTAS
GeneBTG2AuthorityHGNC:1131Mapping file id7832 NCBI fileEvidenceTAS
GeneCARM1AuthorityHGNC:23393Mapping file id10498 NCBI fileEvidenceTAS
GeneCASP1AuthorityHGNC:1499Mapping file id834 NCBI fileEvidenceTAS
GeneCASP10AuthorityHGNC:1500Mapping file id843 NCBI fileEvidenceTAS
GeneCASP2AuthorityHGNC:1503Mapping file id835 NCBI fileEvidenceTAS
GeneCASP6AuthorityHGNC:1507Mapping file id839 NCBI fileEvidenceTAS
GeneCCNA1AuthorityHGNC:1577Mapping file id8900 NCBI fileEvidenceTAS
GeneCCNA2AuthorityHGNC:1578Mapping file id890 NCBI fileEvidenceTAS
GeneCCNB1AuthorityHGNC:1579Mapping file id891 NCBI fileEvidenceTAS
GeneCCNE1AuthorityHGNC:1589Mapping file id898 NCBI fileEvidenceTAS
GeneCCNE2AuthorityHGNC:1590Mapping file id9134 NCBI fileEvidenceTAS
GeneCCNG1AuthorityHGNC:1592Mapping file id900 NCBI fileEvidenceTAS
GeneCCNHAuthorityHGNC:1594Mapping file id902 NCBI fileEvidenceTAS
GeneCCNKAuthorityHGNC:1596Mapping file id8812 NCBI fileEvidenceTAS
GeneCCNT1AuthorityHGNC:1599Mapping file id904 NCBI fileEvidenceTAS
GeneCCNT2AuthorityHGNC:1600Mapping file id905 NCBI fileEvidenceTAS
GeneCDC25CAuthorityHGNC:1727Mapping file id995 NCBI fileEvidenceTAS
GeneCDK1AuthorityHGNC:1722Mapping file id983 NCBI fileEvidenceTAS
GeneCDK12AuthorityHGNC:24224Mapping file id51755 NCBI fileEvidenceTAS
GeneCDK13AuthorityHGNC:1733Mapping file id8621 NCBI fileEvidenceTAS
GeneCDK2AuthorityHGNC:1771Mapping file id1017 NCBI fileEvidenceTAS
GeneCDK5AuthorityHGNC:1774Mapping file id1020 NCBI fileEvidenceTAS
GeneCDK5R1AuthorityHGNC:1775Mapping file id8851 NCBI fileEvidenceTAS
GeneCDK7AuthorityHGNC:1778Mapping file id1022 NCBI fileEvidenceTAS
GeneCDK9AuthorityHGNC:1780Mapping file id1025 NCBI fileEvidenceTAS
GeneCDKN1AAuthorityHGNC:1784Mapping file id1026 NCBI fileEvidenceTAS
GeneCDKN1BAuthorityHGNC:1785Mapping file id1027 NCBI fileEvidenceTAS
GeneCDKN2AAuthorityHGNC:1787Mapping file id1029 NCBI fileEvidenceTAS
GeneCHD3AuthorityHGNC:1918Mapping file id1107 NCBI fileEvidenceTAS
GeneCHD4AuthorityHGNC:1919Mapping file id1108 NCBI fileEvidenceTAS
GeneCHEK1AuthorityHGNC:1925Mapping file id1111 NCBI fileEvidenceTAS
GeneCHEK2AuthorityHGNC:16627Mapping file id11200 NCBI fileEvidenceTAS
GeneCHMAuthorityHGNC:1940Mapping file id1121 NCBI fileEvidenceTAS
GeneCNOT1AuthorityHGNC:7877Mapping file id23019 NCBI fileEvidenceTAS
GeneCNOT10AuthorityHGNC:23817Mapping file id25904 NCBI fileEvidenceTAS
GeneCNOT11AuthorityHGNC:25217Mapping file id55571 NCBI fileEvidenceTAS
GeneCNOT12AuthorityHGNC:19081Mapping file id85456 NCBI fileEvidenceTAS
GeneCNOT2AuthorityHGNC:7878Mapping file id4848 NCBI fileEvidenceTAS
GeneCNOT3AuthorityHGNC:7879Mapping file id4849 NCBI fileEvidenceTAS
GeneCNOT4AuthorityHGNC:7880Mapping file id4850 NCBI fileEvidenceTAS
GeneCNOT6AuthorityHGNC:14099Mapping file id57472 NCBI fileEvidenceTAS
GeneCNOT6LAuthorityHGNC:18042Mapping file id246175 NCBI fileEvidenceTAS
GeneCNOT7AuthorityHGNC:14101Mapping file id29883 NCBI fileEvidenceTAS
GeneCNOT8AuthorityHGNC:9207Mapping file id9337 NCBI fileEvidenceTAS
GeneCNOT9AuthorityHGNC:10445Mapping file id9125 NCBI fileEvidenceTAS
GeneCOX4I1AuthorityHGNC:2265Mapping file id1327 NCBI fileEvidenceTAS
GeneCOX4I2AuthorityHGNC:16232Mapping file id84701 NCBI fileEvidenceTAS
GeneCOX5AAuthorityHGNC:2267Mapping file id9377 NCBI fileEvidenceTAS
GeneCOX5BAuthorityHGNC:2269Mapping file id1329 NCBI fileEvidenceTAS
GeneCOX6A1AuthorityHGNC:2277Mapping file id1337 NCBI fileEvidenceTAS
GeneCOX6A2AuthorityHGNC:2279Mapping file id1339 NCBI fileEvidenceTAS
GeneCOX6B1AuthorityHGNC:2280Mapping file id1340 NCBI fileEvidenceTAS
GeneCOX6B2AuthorityHGNC:24380Mapping file id125965 NCBI fileEvidenceTAS
GeneCOX6CAuthorityHGNC:2285Mapping file id1345 NCBI fileEvidenceTAS
GeneCOX7A1AuthorityHGNC:2287Mapping file id1346 NCBI fileEvidenceTAS
GeneCOX7A2AuthorityHGNC:2288Mapping file id1347 NCBI fileEvidenceTAS
GeneCOX7A2LAuthorityHGNC:2289Mapping file id9167 NCBI fileEvidenceTAS
GeneCOX7BAuthorityHGNC:2291Mapping file id1349 NCBI fileEvidenceTAS
GeneCOX7CAuthorityHGNC:2292Mapping file id1350 NCBI fileEvidenceTAS
GeneCOX8AAuthorityHGNC:2294Mapping file id1351 NCBI fileEvidenceTAS
GeneCOX8CAuthorityHGNC:24382Mapping file id341947 NCBI fileEvidenceTAS
GeneCOXFA4AuthorityHGNC:7687Mapping file id4697 NCBI fileEvidenceTAS
GeneCPAPAuthorityHGNC:17272Mapping file id55835 NCBI fileEvidenceTAS
GeneCRADDAuthorityHGNC:2340Mapping file id8738 NCBI fileEvidenceTAS
GeneCREBBPAuthorityHGNC:2348Mapping file id1387 NCBI fileEvidenceTAS
GeneCSNK2A1AuthorityHGNC:2457Mapping file id1457 NCBI fileEvidenceTAS
GeneCSNK2A2AuthorityHGNC:2459Mapping file id1459 NCBI fileEvidenceTAS
GeneCSNK2BAuthorityHGNC:2460Mapping file id1460 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.