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Pathway Human Homo sapiens

Transcriptional Regulation by TP53

R-HSA-3700989 in Reactome release 97: under Generic Transcription Pathway, with 361 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3700989 (mouse), R-RNO-3700989 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 361 genes in this human pathway; showing 101 to 200, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 2 of 4
GeneCTDP1AuthorityHGNC:2498Mapping file id9150 NCBI fileEvidenceTAS
GeneCYCSAuthorityHGNC:19986Mapping file id54205 NCBI fileEvidenceTAS
GeneDAXXAuthorityHGNC:2681Mapping file id1616 NCBI fileEvidenceTAS
GeneDDB2AuthorityHGNC:2718Mapping file id1643 NCBI fileEvidenceTAS
GeneDDIT4AuthorityHGNC:24944Mapping file id54541 NCBI fileEvidenceTAS
GeneDNA2AuthorityHGNC:2939Mapping file id1763 NCBI fileEvidenceTAS
GeneDYRK2AuthorityHGNC:3093Mapping file id8445 NCBI fileEvidenceTAS
GeneE2F1AuthorityHGNC:3113Mapping file id1869 NCBI fileEvidenceTAS
GeneE2F4AuthorityHGNC:3118Mapping file id1874 NCBI fileEvidenceTAS
GeneE2F7AuthorityHGNC:23820Mapping file id144455 NCBI fileEvidenceTAS
GeneE2F8AuthorityHGNC:24727Mapping file id79733 NCBI fileEvidenceTAS
GeneEHMT1AuthorityHGNC:24650Mapping file id79813 NCBI fileEvidenceTAS
GeneEHMT2AuthorityHGNC:14129Mapping file id10919 NCBI fileEvidenceTAS
GeneELLAuthorityHGNC:23114Mapping file id8178 NCBI fileEvidenceTAS
GeneELOAAuthorityHGNC:11620Mapping file id6924 NCBI fileEvidenceTAS
GeneELOA2AuthorityHGNC:30771Mapping file id51224 NCBI fileEvidenceTAS
GeneELOBAuthorityHGNC:11619Mapping file id6923 NCBI fileEvidenceTAS
GeneELOCAuthorityHGNC:11617Mapping file id6921 NCBI fileEvidenceTAS
GeneEP300AuthorityHGNC:3373Mapping file id2033 NCBI fileEvidenceTAS
GeneERCC2AuthorityHGNC:3434Mapping file id2068 NCBI fileEvidenceTAS
GeneERCC3AuthorityHGNC:3435Mapping file id2071 NCBI fileEvidenceTAS
GeneEXO1AuthorityHGNC:3511Mapping file id9156 NCBI fileEvidenceTAS
GeneFANCCAuthorityHGNC:3584Mapping file id2176 NCBI fileEvidenceTAS
GeneFANCD2AuthorityHGNC:3585Mapping file id2177 NCBI fileEvidenceTAS
GeneFANCIAuthorityHGNC:25568Mapping file id55215 NCBI fileEvidenceTAS
GeneFASAuthorityHGNC:11920Mapping file id355 NCBI fileEvidenceTAS
GeneFOSAuthorityHGNC:3796Mapping file id2353 NCBI fileEvidenceTAS
GeneG6PDAuthorityHGNC:4057Mapping file id2539 NCBI fileEvidenceTAS
GeneGADD45AAuthorityHGNC:4095Mapping file id1647 NCBI fileEvidenceTAS
GeneGATAD2AAuthorityHGNC:29989Mapping file id54815 NCBI fileEvidenceTAS
GeneGATAD2BAuthorityHGNC:30778Mapping file id57459 NCBI fileEvidenceTAS
GeneGLSAuthorityHGNC:4331Mapping file id2744 NCBI fileEvidenceTAS
GeneGLS2AuthorityHGNC:29570Mapping file id27165 NCBI fileEvidenceTAS
GeneGPIAuthorityHGNC:4458Mapping file id2821 NCBI fileEvidenceTAS
GeneGPX2AuthorityHGNC:4554Mapping file id2877 NCBI fileEvidenceTAS
GeneGSRAuthorityHGNC:4623Mapping file id2936 NCBI fileEvidenceTAS
GeneGTF2F1AuthorityHGNC:4652Mapping file id2962 NCBI fileEvidenceTAS
GeneGTF2F2AuthorityHGNC:4653Mapping file id2963 NCBI fileEvidenceTAS
GeneGTF2H1AuthorityHGNC:4655Mapping file id2965 NCBI fileEvidenceTAS
GeneGTF2H2AuthorityHGNC:4656Mapping file id2966 NCBI fileEvidenceTAS
GeneGTF2H3AuthorityHGNC:4657Mapping file id2967 NCBI fileEvidenceTAS
GeneGTF2H4AuthorityHGNC:4658Mapping file id2968 NCBI fileEvidenceTAS
GeneGTF2H5AuthorityHGNC:21157Mapping file id404672 NCBI fileEvidenceTAS
GeneHDAC1AuthorityHGNC:4852Mapping file id3065 NCBI fileEvidenceTAS
GeneHDAC2AuthorityHGNC:4853Mapping file id3066 NCBI fileEvidenceTAS
GeneHIGD1CAuthorityHGNC:28044Mapping file id613227 NCBI fileEvidenceTAS
GeneHIPK1AuthorityHGNC:19006Mapping file id204851 NCBI fileEvidenceTAS
GeneHIPK2AuthorityHGNC:14402Mapping file id28996 NCBI fileEvidenceTAS
GeneHUS1AuthorityHGNC:5309Mapping file id3364 NCBI fileEvidenceTAS
GeneIGFBP3AuthorityHGNC:5472Mapping file id3486 NCBI fileEvidenceTAS
GeneING2AuthorityHGNC:6063Mapping file id3622 NCBI fileEvidenceTAS
GeneING5AuthorityHGNC:19421Mapping file id84289 NCBI fileEvidenceTAS
GeneJMYAuthorityHGNC:28916Mapping file id133746 NCBI fileEvidenceTAS
GeneJUNAuthorityHGNC:6204Mapping file id3725 NCBI fileEvidenceTAS
GeneKAT5AuthorityHGNC:5275Mapping file id10524 NCBI fileEvidenceTAS
GeneKAT6AAuthorityHGNC:13013Mapping file id7994 NCBI fileEvidenceTAS
GeneKMT5AAuthorityHGNC:29489Mapping file id387893 NCBI fileEvidenceTAS
GeneL3MBTL1AuthorityHGNC:15905Mapping file id26013 NCBI fileEvidenceTAS
GeneLAMTOR1AuthorityHGNC:26068Mapping file id55004 NCBI fileEvidenceTAS
GeneLAMTOR2AuthorityHGNC:29796Mapping file id28956 NCBI fileEvidenceTAS
GeneLAMTOR3AuthorityHGNC:15606Mapping file id8649 NCBI fileEvidenceTAS
GeneLAMTOR4AuthorityHGNC:33772Mapping file id389541 NCBI fileEvidenceTAS
GeneLAMTOR5AuthorityHGNC:17955Mapping file id10542 NCBI fileEvidenceTAS
GeneMAP2K6AuthorityHGNC:6846Mapping file id5608 NCBI fileEvidenceTAS
GeneMAPK11AuthorityHGNC:6873Mapping file id5600 NCBI fileEvidenceTAS
GeneMAPK14AuthorityHGNC:6876Mapping file id1432 NCBI fileEvidenceTAS
GeneMAPKAP1AuthorityHGNC:18752Mapping file id79109 NCBI fileEvidenceTAS
GeneMAPKAPK5AuthorityHGNC:6889Mapping file id8550 NCBI fileEvidenceTAS
GeneMBD3AuthorityHGNC:6918Mapping file id53615 NCBI fileEvidenceTAS
GeneMDC1AuthorityHGNC:21163Mapping file id9656 NCBI fileEvidenceTAS
GeneMDM2AuthorityHGNC:6973Mapping file id4193 NCBI fileEvidenceTAS
GeneMDM4AuthorityHGNC:6974Mapping file id4194 NCBI fileEvidenceTAS
GeneMEAF6AuthorityHGNC:25674Mapping file id64769 NCBI fileEvidenceTAS
GeneMLH1AuthorityHGNC:7127Mapping file id4292 NCBI fileEvidenceTAS
GeneMLST8AuthorityHGNC:24825Mapping file id64223 NCBI fileEvidenceTAS
GeneMNAT1AuthorityHGNC:7181Mapping file id4331 NCBI fileEvidenceTAS
GeneMOV10AuthorityHGNC:7200Mapping file id4343 NCBI fileEvidenceTAS
GeneMRE11AuthorityHGNC:7230Mapping file id4361 NCBI fileEvidenceTAS
GeneMSH2AuthorityHGNC:7325Mapping file id4436 NCBI fileEvidenceTAS
GeneMT-CO1AuthorityHGNC:7419Mapping file id4512 NCBI fileEvidenceTAS
GeneMT-CO2AuthorityHGNC:7421Mapping file id4513 NCBI fileEvidenceTAS
GeneMT-CO3AuthorityHGNC:7422Mapping file id4514 NCBI fileEvidenceTAS
GeneMTA2AuthorityHGNC:7411Mapping file id9219 NCBI fileEvidenceTAS
GeneMTORAuthorityHGNC:3942Mapping file id2475 NCBI fileEvidenceTAS
GeneNBNAuthorityHGNC:7652Mapping file id4683 NCBI fileEvidenceTAS
GeneNDRG1AuthorityHGNC:7679Mapping file id10397 NCBI fileEvidenceTAS
GeneNELFAAuthorityHGNC:12768Mapping file id7469 NCBI fileEvidenceTAS
GeneNELFBAuthorityHGNC:24324Mapping file id25920 NCBI fileEvidenceTAS
GeneNELFCDAuthorityHGNC:15934Mapping file id51497 NCBI fileEvidenceTAS
GeneNELFEAuthorityHGNC:13974Mapping file id7936 NCBI fileEvidenceTAS
GeneNLRC4AuthorityHGNC:16412Mapping file id58484 NCBI fileEvidenceTAS
GeneNOC2LAuthorityHGNC:24517Mapping file id26155 NCBI fileEvidenceTAS
GeneNPM1AuthorityHGNC:7910Mapping file id4869 NCBI fileEvidenceTAS
GeneNUAK1AuthorityHGNC:14311Mapping file id9891 NCBI fileEvidenceTAS
GenePCBP4AuthorityHGNC:8652Mapping file id57060 NCBI fileEvidenceTAS
GenePCNAAuthorityHGNC:8729Mapping file id5111 NCBI fileEvidenceTAS
GenePDPK1AuthorityHGNC:8816Mapping file id5170 NCBI fileEvidenceTAS
GenePERPAuthorityHGNC:17637Mapping file id64065 NCBI fileEvidenceTAS
GenePHF20AuthorityHGNC:16098Mapping file id51230 NCBI fileEvidenceTAS
GenePIDD1AuthorityHGNC:16491Mapping file id55367 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.