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Pathway Human Homo sapiens

Transcriptional Regulation by TP53

R-HSA-3700989 in Reactome release 97: under Generic Transcription Pathway, with 361 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3700989 (mouse), R-RNO-3700989 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 361 genes in this human pathway; showing 301 to 361, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 4 of 4
GeneTAF10AuthorityHGNC:11543Mapping file id6881 NCBI fileEvidenceTAS
GeneTAF11AuthorityHGNC:11544Mapping file id6882 NCBI fileEvidenceTAS
GeneTAF12AuthorityHGNC:11545Mapping file id6883 NCBI fileEvidenceTAS
GeneTAF13AuthorityHGNC:11546Mapping file id6884 NCBI fileEvidenceTAS
GeneTAF15AuthorityHGNC:11547Mapping file id8148 NCBI fileEvidenceTAS
GeneTAF1LAuthorityHGNC:18056Mapping file id138474 NCBI fileEvidenceTAS
GeneTAF2AuthorityHGNC:11536Mapping file id6873 NCBI fileEvidenceTAS
GeneTAF3AuthorityHGNC:17303Mapping file id83860 NCBI fileEvidenceTAS
GeneTAF4AuthorityHGNC:11537Mapping file id6874 NCBI fileEvidenceTAS
GeneTAF4BAuthorityHGNC:11538Mapping file id6875 NCBI fileEvidenceTAS
GeneTAF5AuthorityHGNC:11539Mapping file id6877 NCBI fileEvidenceTAS
GeneTAF6AuthorityHGNC:11540Mapping file id6878 NCBI fileEvidenceTAS
GeneTAF7AuthorityHGNC:11541Mapping file id6879 NCBI fileEvidenceTAS
GeneTAF7LAuthorityHGNC:11548Mapping file id54457 NCBI fileEvidenceTAS
GeneTAF8AuthorityHGNC:17300Mapping file id129685 NCBI fileEvidenceTAS
GeneTAF9AuthorityHGNC:11542Mapping file id6880 NCBI fileEvidenceTAS
GeneTAF9BAuthorityHGNC:17306Mapping file id51616 NCBI fileEvidenceTAS
GeneTBPAuthorityHGNC:11588Mapping file id6908 NCBI fileEvidenceTAS
GeneTCEA1AuthorityHGNC:11612Mapping file id6917 NCBI fileEvidenceTAS
GeneTFDP1AuthorityHGNC:11749Mapping file id7027 NCBI fileEvidenceTAS
GeneTFDP2AuthorityHGNC:11751Mapping file id7029 NCBI fileEvidenceTAS
GeneTIGARAuthorityHGNC:1185Mapping file id57103 NCBI fileEvidenceTAS
GeneTMEM219AuthorityHGNC:25201Mapping file id124446 NCBI fileEvidenceTAS
GeneTNFRSF10AAuthorityHGNC:11904Mapping file id8797 NCBI fileEvidenceTAS
GeneTNFRSF10BAuthorityHGNC:11905Mapping file id8795 NCBI fileEvidenceTAS
GeneTNFRSF10CAuthorityHGNC:11906Mapping file id8794 NCBI fileEvidenceTAS
GeneTNFRSF10DAuthorityHGNC:11907Mapping file id8793 NCBI fileEvidenceTAS
GeneTNRC6AAuthorityHGNC:11969Mapping file id27327 NCBI fileEvidenceTAS
GeneTNRC6BAuthorityHGNC:29190Mapping file id23112 NCBI fileEvidenceTAS
GeneTNRC6CAuthorityHGNC:29318Mapping file id57690 NCBI fileEvidenceTAS
GeneTOP3AAuthorityHGNC:11992Mapping file id7156 NCBI fileEvidenceTAS
GeneTOPBP1AuthorityHGNC:17008Mapping file id11073 NCBI fileEvidenceTAS
GeneTP53AuthorityHGNC:11998Mapping file id7157 NCBI fileEvidenceTAS
GeneTP53AIP1AuthorityHGNC:29984Mapping file id63970 NCBI fileEvidenceTAS
GeneTP53BP2AuthorityHGNC:12000Mapping file id7159 NCBI fileEvidenceTAS
GeneTP53I3AuthorityHGNC:19373Mapping file id9540 NCBI fileEvidenceTAS
GeneTP53INP1AuthorityHGNC:18022Mapping file id94241 NCBI fileEvidenceTAS
GeneTP53RKAuthorityHGNC:16197Mapping file id112858 NCBI fileEvidenceTAS
GeneTP63AuthorityHGNC:15979Mapping file id8626 NCBI fileEvidenceTAS
GeneTP73AuthorityHGNC:12003Mapping file id7161 NCBI fileEvidenceTAS
GeneTPX2AuthorityHGNC:1249Mapping file id22974 NCBI fileEvidenceTAS
GeneTRIAP1AuthorityHGNC:26937Mapping file id51499 NCBI fileEvidenceTAS
GeneTSC1AuthorityHGNC:12362Mapping file id7248 NCBI fileEvidenceTAS
GeneTSC2AuthorityHGNC:12363Mapping file id7249 NCBI fileEvidenceTAS
GeneTTC5AuthorityHGNC:19274Mapping file id91875 NCBI fileEvidenceTAS
GeneTXNAuthorityHGNC:12435Mapping file id7295 NCBI fileEvidenceTAS
GeneTXNRD1AuthorityHGNC:12437Mapping file id7296 NCBI fileEvidenceTAS
GeneUBA52AuthorityHGNC:12458Mapping file id7311 NCBI fileEvidenceTAS
GeneUBBAuthorityHGNC:12463Mapping file id7314 NCBI fileEvidenceTAS
GeneUBCAuthorityHGNC:12468Mapping file id7316 NCBI fileEvidenceTAS
GeneUSP2AuthorityHGNC:12618Mapping file id9099 NCBI fileEvidenceTAS
GeneUSP7AuthorityHGNC:12630Mapping file id7874 NCBI fileEvidenceTAS
GeneWRNAuthorityHGNC:12791Mapping file id7486 NCBI fileEvidenceTAS
GeneYWHABAuthorityHGNC:12849Mapping file id7529 NCBI fileEvidenceTAS
GeneYWHAEAuthorityHGNC:12851Mapping file id7531 NCBI fileEvidenceTAS
GeneYWHAGAuthorityHGNC:12852Mapping file id7532 NCBI fileEvidenceTAS
GeneYWHAHAuthorityHGNC:12853Mapping file id7533 NCBI fileEvidenceTAS
GeneYWHAQAuthorityHGNC:12854Mapping file id10971 NCBI fileEvidenceTAS
GeneYWHAZAuthorityHGNC:12855Mapping file id7534 NCBI fileEvidenceTAS
GeneZNF385AAuthorityHGNC:17521Mapping file id25946 NCBI fileEvidenceTAS
GeneZNF420AuthorityHGNC:20649Mapping file id147923 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.