Pathway Human Homo sapiens
Transcriptional Regulation by TP53
R-HSA-3700989 in Reactome release 97: under Generic Transcription Pathway, with 361 genes placed in it by the mapping files and 5 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3700989 (mouse), R-RNO-3700989 (rat). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this human pathway
The mapping files place 361 genes in this human pathway; showing 301 to 361, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneTAF10 | AuthorityHGNC:11543 | Mapping file id6881 NCBI file | EvidenceTAS |
| GeneTAF11 | AuthorityHGNC:11544 | Mapping file id6882 NCBI file | EvidenceTAS |
| GeneTAF12 | AuthorityHGNC:11545 | Mapping file id6883 NCBI file | EvidenceTAS |
| GeneTAF13 | AuthorityHGNC:11546 | Mapping file id6884 NCBI file | EvidenceTAS |
| GeneTAF15 | AuthorityHGNC:11547 | Mapping file id8148 NCBI file | EvidenceTAS |
| GeneTAF1L | AuthorityHGNC:18056 | Mapping file id138474 NCBI file | EvidenceTAS |
| GeneTAF2 | AuthorityHGNC:11536 | Mapping file id6873 NCBI file | EvidenceTAS |
| GeneTAF3 | AuthorityHGNC:17303 | Mapping file id83860 NCBI file | EvidenceTAS |
| GeneTAF4 | AuthorityHGNC:11537 | Mapping file id6874 NCBI file | EvidenceTAS |
| GeneTAF4B | AuthorityHGNC:11538 | Mapping file id6875 NCBI file | EvidenceTAS |
| GeneTAF5 | AuthorityHGNC:11539 | Mapping file id6877 NCBI file | EvidenceTAS |
| GeneTAF6 | AuthorityHGNC:11540 | Mapping file id6878 NCBI file | EvidenceTAS |
| GeneTAF7 | AuthorityHGNC:11541 | Mapping file id6879 NCBI file | EvidenceTAS |
| GeneTAF7L | AuthorityHGNC:11548 | Mapping file id54457 NCBI file | EvidenceTAS |
| GeneTAF8 | AuthorityHGNC:17300 | Mapping file id129685 NCBI file | EvidenceTAS |
| GeneTAF9 | AuthorityHGNC:11542 | Mapping file id6880 NCBI file | EvidenceTAS |
| GeneTAF9B | AuthorityHGNC:17306 | Mapping file id51616 NCBI file | EvidenceTAS |
| GeneTBP | AuthorityHGNC:11588 | Mapping file id6908 NCBI file | EvidenceTAS |
| GeneTCEA1 | AuthorityHGNC:11612 | Mapping file id6917 NCBI file | EvidenceTAS |
| GeneTFDP1 | AuthorityHGNC:11749 | Mapping file id7027 NCBI file | EvidenceTAS |
| GeneTFDP2 | AuthorityHGNC:11751 | Mapping file id7029 NCBI file | EvidenceTAS |
| GeneTIGAR | AuthorityHGNC:1185 | Mapping file id57103 NCBI file | EvidenceTAS |
| GeneTMEM219 | AuthorityHGNC:25201 | Mapping file id124446 NCBI file | EvidenceTAS |
| GeneTNFRSF10A | AuthorityHGNC:11904 | Mapping file id8797 NCBI file | EvidenceTAS |
| GeneTNFRSF10B | AuthorityHGNC:11905 | Mapping file id8795 NCBI file | EvidenceTAS |
| GeneTNFRSF10C | AuthorityHGNC:11906 | Mapping file id8794 NCBI file | EvidenceTAS |
| GeneTNFRSF10D | AuthorityHGNC:11907 | Mapping file id8793 NCBI file | EvidenceTAS |
| GeneTNRC6A | AuthorityHGNC:11969 | Mapping file id27327 NCBI file | EvidenceTAS |
| GeneTNRC6B | AuthorityHGNC:29190 | Mapping file id23112 NCBI file | EvidenceTAS |
| GeneTNRC6C | AuthorityHGNC:29318 | Mapping file id57690 NCBI file | EvidenceTAS |
| GeneTOP3A | AuthorityHGNC:11992 | Mapping file id7156 NCBI file | EvidenceTAS |
| GeneTOPBP1 | AuthorityHGNC:17008 | Mapping file id11073 NCBI file | EvidenceTAS |
| GeneTP53 | AuthorityHGNC:11998 | Mapping file id7157 NCBI file | EvidenceTAS |
| GeneTP53AIP1 | AuthorityHGNC:29984 | Mapping file id63970 NCBI file | EvidenceTAS |
| GeneTP53BP2 | AuthorityHGNC:12000 | Mapping file id7159 NCBI file | EvidenceTAS |
| GeneTP53I3 | AuthorityHGNC:19373 | Mapping file id9540 NCBI file | EvidenceTAS |
| GeneTP53INP1 | AuthorityHGNC:18022 | Mapping file id94241 NCBI file | EvidenceTAS |
| GeneTP53RK | AuthorityHGNC:16197 | Mapping file id112858 NCBI file | EvidenceTAS |
| GeneTP63 | AuthorityHGNC:15979 | Mapping file id8626 NCBI file | EvidenceTAS |
| GeneTP73 | AuthorityHGNC:12003 | Mapping file id7161 NCBI file | EvidenceTAS |
| GeneTPX2 | AuthorityHGNC:1249 | Mapping file id22974 NCBI file | EvidenceTAS |
| GeneTRIAP1 | AuthorityHGNC:26937 | Mapping file id51499 NCBI file | EvidenceTAS |
| GeneTSC1 | AuthorityHGNC:12362 | Mapping file id7248 NCBI file | EvidenceTAS |
| GeneTSC2 | AuthorityHGNC:12363 | Mapping file id7249 NCBI file | EvidenceTAS |
| GeneTTC5 | AuthorityHGNC:19274 | Mapping file id91875 NCBI file | EvidenceTAS |
| GeneTXN | AuthorityHGNC:12435 | Mapping file id7295 NCBI file | EvidenceTAS |
| GeneTXNRD1 | AuthorityHGNC:12437 | Mapping file id7296 NCBI file | EvidenceTAS |
| GeneUBA52 | AuthorityHGNC:12458 | Mapping file id7311 NCBI file | EvidenceTAS |
| GeneUBB | AuthorityHGNC:12463 | Mapping file id7314 NCBI file | EvidenceTAS |
| GeneUBC | AuthorityHGNC:12468 | Mapping file id7316 NCBI file | EvidenceTAS |
| GeneUSP2 | AuthorityHGNC:12618 | Mapping file id9099 NCBI file | EvidenceTAS |
| GeneUSP7 | AuthorityHGNC:12630 | Mapping file id7874 NCBI file | EvidenceTAS |
| GeneWRN | AuthorityHGNC:12791 | Mapping file id7486 NCBI file | EvidenceTAS |
| GeneYWHAB | AuthorityHGNC:12849 | Mapping file id7529 NCBI file | EvidenceTAS |
| GeneYWHAE | AuthorityHGNC:12851 | Mapping file id7531 NCBI file | EvidenceTAS |
| GeneYWHAG | AuthorityHGNC:12852 | Mapping file id7532 NCBI file | EvidenceTAS |
| GeneYWHAH | AuthorityHGNC:12853 | Mapping file id7533 NCBI file | EvidenceTAS |
| GeneYWHAQ | AuthorityHGNC:12854 | Mapping file id10971 NCBI file | EvidenceTAS |
| GeneYWHAZ | AuthorityHGNC:12855 | Mapping file id7534 NCBI file | EvidenceTAS |
| GeneZNF385A | AuthorityHGNC:17521 | Mapping file id25946 NCBI file | EvidenceTAS |
| GeneZNF420 | AuthorityHGNC:20649 | Mapping file id147923 NCBI file | EvidenceTAS |
Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.
- Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Children
- Regulation of TP53 ActivityR-HSA-5633007161 genes
- TP53 Regulates Metabolic GenesR-HSA-562889784 genes
- TP53 Regulates Transcription of Cell Cycle GenesR-HSA-679131249 genes
- TP53 Regulates Transcription of Cell Death GenesR-HSA-563300844 genes
- TP53 Regulates Transcription of DNA Repair GenesR-HSA-679664862 genes
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.