Skip to content

Create an account and get up to 25% off.

Order

Pathway Human Homo sapiens

Transcriptional Regulation by TP53

R-HSA-3700989 in Reactome release 97: under Generic Transcription Pathway, with 361 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3700989 (mouse), R-RNO-3700989 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 361 genes in this human pathway; showing 201 to 300, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 3 of 4
GenePIN1AuthorityHGNC:8988Mapping file id5300 NCBI fileEvidenceTAS
GenePIP4K2AAuthorityHGNC:8997Mapping file id5305 NCBI fileEvidenceTAS
GenePIP4K2BAuthorityHGNC:8998Mapping file id8396 NCBI fileEvidenceTAS
GenePIP4K2CAuthorityHGNC:23786Mapping file id79837 NCBI fileEvidenceTAS
GenePIP4P1AuthorityHGNC:19299Mapping file id90809 NCBI fileEvidenceTAS
GenePLAGL1AuthorityHGNC:9046Mapping file id5325 NCBI fileEvidenceTAS
GenePLK2AuthorityHGNC:19699Mapping file id10769 NCBI fileEvidenceTAS
GenePLK3AuthorityHGNC:2154Mapping file id1263 NCBI fileEvidenceTAS
GenePMAIP1AuthorityHGNC:9108Mapping file id5366 NCBI fileEvidenceTAS
GenePMLAuthorityHGNC:9113Mapping file id5371 NCBI fileEvidenceTAS
GenePMS2AuthorityHGNC:9122Mapping file id5395 NCBI fileEvidenceTAS
GenePOLR2AAuthorityHGNC:9187Mapping file id5430 NCBI fileEvidenceTAS
GenePOLR2BAuthorityHGNC:9188Mapping file id5431 NCBI fileEvidenceTAS
GenePOLR2CAuthorityHGNC:9189Mapping file id5432 NCBI fileEvidenceTAS
GenePOLR2DAuthorityHGNC:9191Mapping file id5433 NCBI fileEvidenceTAS
GenePOLR2EAuthorityHGNC:9192Mapping file id5434 NCBI fileEvidenceTAS
GenePOLR2FAuthorityHGNC:9193Mapping file id5435 NCBI fileEvidenceTAS
GenePOLR2GAuthorityHGNC:9194Mapping file id5436 NCBI fileEvidenceTAS
GenePOLR2HAuthorityHGNC:9195Mapping file id5437 NCBI fileEvidenceTAS
GenePOLR2IAuthorityHGNC:9196Mapping file id5438 NCBI fileEvidenceTAS
GenePOLR2JAuthorityHGNC:9197Mapping file id5439 NCBI fileEvidenceTAS
GenePOLR2KAuthorityHGNC:9198Mapping file id5440 NCBI fileEvidenceTAS
GenePOLR2LAuthorityHGNC:9199Mapping file id5441 NCBI fileEvidenceTAS
GenePOU4F1AuthorityHGNC:9218Mapping file id5457 NCBI fileEvidenceTAS
GenePOU4F2AuthorityHGNC:9219Mapping file id5458 NCBI fileEvidenceTAS
GenePPP1R13BAuthorityHGNC:14950Mapping file id23368 NCBI fileEvidenceTAS
GenePPP1R13LAuthorityHGNC:18838Mapping file id10848 NCBI fileEvidenceTAS
GenePPP2CAAuthorityHGNC:9299Mapping file id5515 NCBI fileEvidenceTAS
GenePPP2CBAuthorityHGNC:9300Mapping file id5516 NCBI fileEvidenceTAS
GenePPP2R1AAuthorityHGNC:9302Mapping file id5518 NCBI fileEvidenceTAS
GenePPP2R1BAuthorityHGNC:9303Mapping file id5519 NCBI fileEvidenceTAS
GenePPP2R5CAuthorityHGNC:9311Mapping file id5527 NCBI fileEvidenceTAS
GenePRDM1AuthorityHGNC:9346Mapping file id639 NCBI fileEvidenceTAS
GenePRDX1AuthorityHGNC:9352Mapping file id5052 NCBI fileEvidenceTAS
GenePRDX2AuthorityHGNC:9353Mapping file id7001 NCBI fileEvidenceTAS
GenePRDX5AuthorityHGNC:9355Mapping file id25824 NCBI fileEvidenceTAS
GenePRELID1AuthorityHGNC:30255Mapping file id27166 NCBI fileEvidenceTAS
GenePRELID3AAuthorityHGNC:24639Mapping file id10650 NCBI fileEvidenceTAS
GenePRKAA1AuthorityHGNC:9376Mapping file id5562 NCBI fileEvidenceTAS
GenePRKAA2AuthorityHGNC:9377Mapping file id5563 NCBI fileEvidenceTAS
GenePRKAB1AuthorityHGNC:9378Mapping file id5564 NCBI fileEvidenceTAS
GenePRKAB2AuthorityHGNC:9379Mapping file id5565 NCBI fileEvidenceTAS
GenePRKAG1AuthorityHGNC:9385Mapping file id5571 NCBI fileEvidenceTAS
GenePRKAG2AuthorityHGNC:9386Mapping file id51422 NCBI fileEvidenceTAS
GenePRKAG3AuthorityHGNC:9387Mapping file id53632 NCBI fileEvidenceTAS
GenePRMT1AuthorityHGNC:5187Mapping file id3276 NCBI fileEvidenceTAS
GenePRMT5AuthorityHGNC:10894Mapping file id10419 NCBI fileEvidenceTAS
GenePRR5AuthorityHGNC:31682Mapping file id55615 NCBI fileEvidenceTAS
GenePTENAuthorityHGNC:9588Mapping file id5728 NCBI fileEvidenceTAS
GeneRABGGTAAuthorityHGNC:9795Mapping file id5875 NCBI fileEvidenceTAS
GeneRABGGTBAuthorityHGNC:9796Mapping file id5876 NCBI fileEvidenceTAS
GeneRAD1AuthorityHGNC:9806Mapping file id5810 NCBI fileEvidenceTAS
GeneRAD17AuthorityHGNC:9807Mapping file id5884 NCBI fileEvidenceTAS
GeneRAD50AuthorityHGNC:9816Mapping file id10111 NCBI fileEvidenceTAS
GeneRAD51DAuthorityHGNC:9823Mapping file id5892 NCBI fileEvidenceTAS
GeneRAD9AAuthorityHGNC:9827Mapping file id5883 NCBI fileEvidenceTAS
GeneRAD9BAuthorityHGNC:21700Mapping file id144715 NCBI fileEvidenceTAS
GeneRBBP4AuthorityHGNC:9887Mapping file id5928 NCBI fileEvidenceTAS
GeneRBBP7AuthorityHGNC:9890Mapping file id5931 NCBI fileEvidenceTAS
GeneRBBP8AuthorityHGNC:9891Mapping file id5932 NCBI fileEvidenceTAS
GeneRBL1AuthorityHGNC:9893Mapping file id5933 NCBI fileEvidenceTAS
GeneRBL2AuthorityHGNC:9894Mapping file id5934 NCBI fileEvidenceTAS
GeneRFC2AuthorityHGNC:9970Mapping file id5982 NCBI fileEvidenceTAS
GeneRFC3AuthorityHGNC:9971Mapping file id5983 NCBI fileEvidenceTAS
GeneRFC4AuthorityHGNC:9972Mapping file id5984 NCBI fileEvidenceTAS
GeneRFC5AuthorityHGNC:9973Mapping file id5985 NCBI fileEvidenceTAS
GeneRFFLAuthorityHGNC:24821Mapping file id117584 NCBI fileEvidenceTAS
GeneRGCCAuthorityHGNC:20369Mapping file id28984 NCBI fileEvidenceTAS
GeneRHEBAuthorityHGNC:10011Mapping file id6009 NCBI fileEvidenceTAS
GeneRHNO1AuthorityHGNC:28206Mapping file id83695 NCBI fileEvidenceTAS
GeneRICTORAuthorityHGNC:28611Mapping file id253260 NCBI fileEvidenceTAS
GeneRMI1AuthorityHGNC:25764Mapping file id80010 NCBI fileEvidenceTAS
GeneRMI2AuthorityHGNC:28349Mapping file id116028 NCBI fileEvidenceTAS
GeneRNF34AuthorityHGNC:17297Mapping file id80196 NCBI fileEvidenceTAS
GeneRPA1AuthorityHGNC:10289Mapping file id6117 NCBI fileEvidenceTAS
GeneRPA2AuthorityHGNC:10290Mapping file id6118 NCBI fileEvidenceTAS
GeneRPA3AuthorityHGNC:10291Mapping file id6119 NCBI fileEvidenceTAS
GeneRPS27AAuthorityHGNC:10417Mapping file id6233 NCBI fileEvidenceTAS
GeneRPTORAuthorityHGNC:30287Mapping file id57521 NCBI fileEvidenceTAS
GeneRRAGAAuthorityHGNC:16963Mapping file id10670 NCBI fileEvidenceTAS
GeneRRAGBAuthorityHGNC:19901Mapping file id10325 NCBI fileEvidenceTAS
GeneRRAGCAuthorityHGNC:19902Mapping file id64121 NCBI fileEvidenceTAS
GeneRRAGDAuthorityHGNC:19903Mapping file id58528 NCBI fileEvidenceTAS
GeneRRM2BAuthorityHGNC:17296Mapping file id50484 NCBI fileEvidenceTAS
GeneSCO2AuthorityHGNC:10604Mapping file id9997 NCBI fileEvidenceTAS
GeneSESN1AuthorityHGNC:21595Mapping file id27244 NCBI fileEvidenceTAS
GeneSESN2AuthorityHGNC:20746Mapping file id83667 NCBI fileEvidenceTAS
GeneSESN3AuthorityHGNC:23060Mapping file id143686 NCBI fileEvidenceTAS
GeneSETD9AuthorityHGNC:28508Mapping file id133383 NCBI fileEvidenceTAS
GeneSFNAuthorityHGNC:10773Mapping file id2810 NCBI fileEvidenceTAS
GeneSGK1AuthorityHGNC:10810Mapping file id6446 NCBI fileEvidenceTAS
GeneSLC38A9AuthorityHGNC:26907Mapping file id153129 NCBI fileEvidenceTAS
GeneSMYD2AuthorityHGNC:20982Mapping file id56950 NCBI fileEvidenceTAS
GeneSSRP1AuthorityHGNC:11327Mapping file id6749 NCBI fileEvidenceTAS
GeneSTEAP3AuthorityHGNC:24592Mapping file id55240 NCBI fileEvidenceTAS
GeneSTK11AuthorityHGNC:11389Mapping file id6794 NCBI fileEvidenceTAS
GeneSUPT16HAuthorityHGNC:11465Mapping file id11198 NCBI fileEvidenceTAS
GeneSUPT4H1AuthorityHGNC:11467Mapping file id6827 NCBI fileEvidenceTAS
GeneSUPT5HAuthorityHGNC:11469Mapping file id6829 NCBI fileEvidenceTAS
GeneTAF1AuthorityHGNC:11535Mapping file id6872 NCBI fileEvidenceTAS

Evidence codes on this page: TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.