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Pathway Human Homo sapiens

Beta-catenin independent WNT signaling

R-HSA-3858494 in Reactome release 97: under Signaling by WNT, with 135 genes placed in it by the mapping files and 2 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-3858494 (mouse), R-RNO-3858494 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 135 genes in this human pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 2
GeneADRM1AuthorityHGNC:15759Mapping file id11047 NCBI fileEvidenceTAS
GeneAGO1AuthorityHGNC:3262Mapping file id26523 NCBI fileEvidenceTAS
GeneAGO2AuthorityHGNC:3263Mapping file id27161 NCBI fileEvidenceTAS
GeneAGO3AuthorityHGNC:18421Mapping file id192669 NCBI fileEvidenceTAS
GeneAGO4AuthorityHGNC:18424Mapping file id192670 NCBI fileEvidenceTAS
GeneAP2A1AuthorityHGNC:561Mapping file id160 NCBI fileEvidenceTAS
GeneAP2A2AuthorityHGNC:562Mapping file id161 NCBI fileEvidenceTAS
GeneAP2B1AuthorityHGNC:563Mapping file id163 NCBI fileEvidenceTAS
GeneAP2M1AuthorityHGNC:564Mapping file id1173 NCBI fileEvidenceTAS
GeneAP2S1AuthorityHGNC:565Mapping file id1175 NCBI fileEvidenceTAS
GeneARRB2AuthorityHGNC:712Mapping file id409 NCBI fileEvidenceTAS
GeneAXIN2AuthorityHGNC:904Mapping file idENSG00000168646 Ensembl fileEvidenceTAS
GeneCALM1AuthorityHGNC:1442Mapping file id801 NCBI fileEvidenceTAS
GeneCALM2AuthorityHGNC:1445Mapping file id805 NCBI fileEvidenceTAS
GeneCALM3AuthorityHGNC:1449Mapping file id808 NCBI fileEvidenceTAS
GeneCAMK2AAuthorityHGNC:1460Mapping file id815 NCBI fileEvidenceTAS
GeneCLTAAuthorityHGNC:2090Mapping file id1211 NCBI fileEvidenceTAS
GeneCLTBAuthorityHGNC:2091Mapping file id1212 NCBI fileEvidenceTAS
GeneCLTCAuthorityHGNC:2092Mapping file id1213 NCBI fileEvidenceTAS
GeneCTNNB1AuthorityHGNC:2514Mapping file id1499 NCBI fileEvidenceTAS
GeneDAAM1AuthorityHGNC:18142Mapping file id23002 NCBI fileEvidenceTAS
GeneDVL1AuthorityHGNC:3084Mapping file id1855 NCBI fileEvidenceIEA, TAS
GeneDVL2AuthorityHGNC:3086Mapping file id1856 NCBI fileEvidenceIEA, TAS
GeneDVL3AuthorityHGNC:3087Mapping file id1857 NCBI fileEvidenceIEA, TAS
GeneFZD1AuthorityHGNC:4038Mapping file id8321 NCBI fileEvidenceIEA, TAS
GeneFZD2AuthorityHGNC:4040Mapping file id2535 NCBI fileEvidenceIEA, TAS
GeneFZD3AuthorityHGNC:4041Mapping file id7976 NCBI fileEvidenceIEA, TAS
GeneFZD4AuthorityHGNC:4042Mapping file id8322 NCBI fileEvidenceIEA, TAS
GeneFZD5AuthorityHGNC:4043Mapping file id7855 NCBI fileEvidenceIEA, TAS
GeneFZD6AuthorityHGNC:4044Mapping file id8323 NCBI fileEvidenceIEA, TAS
GeneFZD7AuthorityHGNC:4045Mapping file id8324 NCBI fileEvidenceIEA, TAS
GeneFZD8AuthorityHGNC:4046Mapping file id8325 NCBI fileEvidenceTAS
GeneGNAO1AuthorityHGNC:4389Mapping file id2775 NCBI fileEvidenceIEA, TAS
GeneGNAT2AuthorityHGNC:4394Mapping file id2780 NCBI fileEvidenceIEA, TAS
GeneGNB1AuthorityHGNC:4396Mapping file id2782 NCBI fileEvidenceIEA, TAS
GeneGNB2AuthorityHGNC:4398Mapping file id2783 NCBI fileEvidenceIEA, TAS
GeneGNB3AuthorityHGNC:4400Mapping file id2784 NCBI fileEvidenceIEA, TAS
GeneGNB4AuthorityHGNC:20731Mapping file id59345 NCBI fileEvidenceIEA, TAS
GeneGNB5AuthorityHGNC:4401Mapping file id10681 NCBI fileEvidenceIEA, TAS
GeneGNG10AuthorityHGNC:4402Mapping file id2790 NCBI fileEvidenceIEA, TAS
GeneGNG11AuthorityHGNC:4403Mapping file id2791 NCBI fileEvidenceIEA, TAS
GeneGNG12AuthorityHGNC:19663Mapping file id55970 NCBI fileEvidenceIEA, TAS
GeneGNG13AuthorityHGNC:14131Mapping file id51764 NCBI fileEvidenceIEA, TAS
GeneGNG2AuthorityHGNC:4404Mapping file id54331 NCBI fileEvidenceIEA, TAS
GeneGNG3AuthorityHGNC:4405Mapping file id2785 NCBI fileEvidenceIEA, TAS
GeneGNG4AuthorityHGNC:4407Mapping file id2786 NCBI fileEvidenceIEA, TAS
GeneGNG5AuthorityHGNC:4408Mapping file id2787 NCBI fileEvidenceIEA, TAS
GeneGNG7AuthorityHGNC:4410Mapping file id2788 NCBI fileEvidenceIEA, TAS
GeneGNG8AuthorityHGNC:19664Mapping file id94235 NCBI fileEvidenceIEA, TAS
GeneGNGT1AuthorityHGNC:4411Mapping file id2792 NCBI fileEvidenceIEA, TAS
GeneGNGT2AuthorityHGNC:4412Mapping file id2793 NCBI fileEvidenceIEA, TAS
GeneITPR1AuthorityHGNC:6180Mapping file id3708 NCBI fileEvidenceIEA
GeneITPR2AuthorityHGNC:6181Mapping file id3709 NCBI fileEvidenceIEA
GeneITPR3AuthorityHGNC:6182Mapping file id3710 NCBI fileEvidenceIEA
GeneKRASAuthorityHGNC:6407Mapping file id3845 NCBI fileEvidenceTAS
GeneLEF1AuthorityHGNC:6551Mapping file id51176 NCBI fileEvidenceTAS
GeneMAP3K7AuthorityHGNC:6859Mapping file id6885 NCBI fileEvidenceTAS
GeneMOV10AuthorityHGNC:7200Mapping file id4343 NCBI fileEvidenceTAS
GeneMYCAuthorityHGNC:7553Mapping file idENSG00000136997 Ensembl fileEvidenceTAS
GeneNFATC1AuthorityHGNC:7775Mapping file id4772 NCBI fileEvidenceTAS
GeneNLKAuthorityHGNC:29858Mapping file id51701 NCBI fileEvidenceTAS
GenePARD6AAuthorityHGNC:15943Mapping file id50855 NCBI fileEvidenceTAS
GenePDE6AAuthorityHGNC:8785Mapping file id5145 NCBI fileEvidenceIEA, TAS
GenePDE6BAuthorityHGNC:8786Mapping file id5158 NCBI fileEvidenceIEA, TAS
GenePDE6GAuthorityHGNC:8789Mapping file id5148 NCBI fileEvidenceIEA, TAS
GenePFN1AuthorityHGNC:8881Mapping file id5216 NCBI fileEvidenceTAS
GenePLCB1AuthorityHGNC:15917Mapping file id23236 NCBI fileEvidenceTAS
GenePLCB2AuthorityHGNC:9055Mapping file id5330 NCBI fileEvidenceTAS
GenePLCB3AuthorityHGNC:9056Mapping file id5331 NCBI fileEvidenceTAS
GenePPP3CAAuthorityHGNC:9314Mapping file id5530 NCBI fileEvidenceTAS
GenePPP3CBAuthorityHGNC:9315Mapping file id5532 NCBI fileEvidenceTAS
GenePPP3R1AuthorityHGNC:9317Mapping file id5534 NCBI fileEvidenceTAS
GenePRICKLE1AuthorityHGNC:17019Mapping file id144165 NCBI fileEvidenceTAS
GenePRKCAAuthorityHGNC:9393Mapping file id5578 NCBI fileEvidenceIEA, TAS
GenePRKCBAuthorityHGNC:9395Mapping file id5579 NCBI fileEvidenceTAS
GenePRKCGAuthorityHGNC:9402Mapping file id5582 NCBI fileEvidenceTAS
GenePRKG1AuthorityHGNC:9414Mapping file id5592 NCBI fileEvidenceIEA
GenePRKG2AuthorityHGNC:9416Mapping file id5593 NCBI fileEvidenceIEA
GenePSMA1AuthorityHGNC:9530Mapping file id5682 NCBI fileEvidenceTAS
GenePSMA2AuthorityHGNC:9531Mapping file id5683 NCBI fileEvidenceTAS
GenePSMA3AuthorityHGNC:9532Mapping file id5684 NCBI fileEvidenceTAS
GenePSMA4AuthorityHGNC:9533Mapping file id5685 NCBI fileEvidenceTAS
GenePSMA5AuthorityHGNC:9534Mapping file id5686 NCBI fileEvidenceTAS
GenePSMA6AuthorityHGNC:9535Mapping file id5687 NCBI fileEvidenceTAS
GenePSMA7AuthorityHGNC:9536Mapping file id5688 NCBI fileEvidenceTAS
GenePSMB1AuthorityHGNC:9537Mapping file id5689 NCBI fileEvidenceTAS
GenePSMB2AuthorityHGNC:9539Mapping file id5690 NCBI fileEvidenceTAS
GenePSMB3AuthorityHGNC:9540Mapping file id5691 NCBI fileEvidenceTAS
GenePSMB4AuthorityHGNC:9541Mapping file id5692 NCBI fileEvidenceTAS
GenePSMB5AuthorityHGNC:9542Mapping file id5693 NCBI fileEvidenceTAS
GenePSMB6AuthorityHGNC:9543Mapping file id5694 NCBI fileEvidenceTAS
GenePSMB7AuthorityHGNC:9544Mapping file id5695 NCBI fileEvidenceTAS
GenePSMC1AuthorityHGNC:9547Mapping file id5700 NCBI fileEvidenceTAS
GenePSMC2AuthorityHGNC:9548Mapping file id5701 NCBI fileEvidenceTAS
GenePSMC3AuthorityHGNC:9549Mapping file id5702 NCBI fileEvidenceTAS
GenePSMC4AuthorityHGNC:9551Mapping file id5704 NCBI fileEvidenceTAS
GenePSMC5AuthorityHGNC:9552Mapping file id5705 NCBI fileEvidenceTAS
GenePSMC6AuthorityHGNC:9553Mapping file id5706 NCBI fileEvidenceTAS
GenePSMD1AuthorityHGNC:9554Mapping file id5707 NCBI fileEvidenceTAS
GenePSMD11AuthorityHGNC:9556Mapping file id5717 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.