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Pathway Human Homo sapiens

Metal ion SLC transporters

R-HSA-425410 in Reactome release 97: under SLC-mediated transmembrane transport, with 46 genes placed in it by the mapping files and 3 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-425410 (mouse), R-RNO-425410 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 46 genes in this human pathway; showing 1 to 46, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneCALM1AuthorityHGNC:1442Mapping file id801 NCBI fileEvidenceTAS
GeneCALM2AuthorityHGNC:1445Mapping file id805 NCBI fileEvidenceTAS
GeneCALM3AuthorityHGNC:1449Mapping file id808 NCBI fileEvidenceTAS
GeneCPAuthorityHGNC:2295Mapping file id1356 NCBI fileEvidenceTAS
GeneHEPHAuthorityHGNC:4866Mapping file id9843 NCBI fileEvidenceTAS
GeneSLC11A1AuthorityHGNC:10907Mapping file id6556 NCBI fileEvidenceTAS
GeneSLC11A2AuthorityHGNC:10908Mapping file id4891 NCBI fileEvidenceTAS
GeneSLC24A1AuthorityHGNC:10975Mapping file id9187 NCBI fileEvidenceTAS
GeneSLC24A2AuthorityHGNC:10976Mapping file id25769 NCBI fileEvidenceTAS
GeneSLC24A3AuthorityHGNC:10977Mapping file id57419 NCBI fileEvidenceTAS
GeneSLC24A4AuthorityHGNC:10978Mapping file id123041 NCBI fileEvidenceTAS
GeneSLC24A5AuthorityHGNC:20611Mapping file id283652 NCBI fileEvidenceTAS
GeneSLC30A1AuthorityHGNC:11012Mapping file id7779 NCBI fileEvidenceTAS
GeneSLC30A10AuthorityHGNC:25355Mapping file id55532 NCBI fileEvidenceTAS
GeneSLC30A2AuthorityHGNC:11013Mapping file id7780 NCBI fileEvidenceIEA
GeneSLC30A3AuthorityHGNC:11014Mapping file id7781 NCBI fileEvidenceIEA
GeneSLC30A5AuthorityHGNC:19089Mapping file id64924 NCBI fileEvidenceTAS
GeneSLC30A8AuthorityHGNC:20303Mapping file id169026 NCBI fileEvidenceTAS
GeneSLC31A1AuthorityHGNC:11016Mapping file id1317 NCBI fileEvidenceTAS
GeneSLC39A1AuthorityHGNC:12876Mapping file id27173 NCBI fileEvidenceTAS
GeneSLC39A10AuthorityHGNC:20861Mapping file id57181 NCBI fileEvidenceIEA
GeneSLC39A14AuthorityHGNC:20858Mapping file id23516 NCBI fileEvidenceTAS
GeneSLC39A2AuthorityHGNC:17127Mapping file id29986 NCBI fileEvidenceTAS
GeneSLC39A3AuthorityHGNC:17128Mapping file id29985 NCBI fileEvidenceTAS
GeneSLC39A4AuthorityHGNC:17129Mapping file id55630 NCBI fileEvidenceTAS
GeneSLC39A5AuthorityHGNC:20502Mapping file id283375 NCBI fileEvidenceIEA
GeneSLC39A6AuthorityHGNC:18607Mapping file id25800 NCBI fileEvidenceTAS
GeneSLC39A7AuthorityHGNC:4927Mapping file id7922 NCBI fileEvidenceTAS
GeneSLC39A8AuthorityHGNC:20862Mapping file id64116 NCBI fileEvidenceTAS
GeneSLC40A1AuthorityHGNC:10909Mapping file id30061 NCBI fileEvidenceTAS
GeneSLC41A1AuthorityHGNC:19429Mapping file id254428 NCBI fileEvidenceTAS
GeneSLC41A2AuthorityHGNC:31045Mapping file id84102 NCBI fileEvidenceTAS
GeneSLC8A1AuthorityHGNC:11068Mapping file id6546 NCBI fileEvidenceTAS
GeneSLC8A2AuthorityHGNC:11069Mapping file id6543 NCBI fileEvidenceTAS
GeneSLC8A3AuthorityHGNC:11070Mapping file id6547 NCBI fileEvidenceTAS
GeneSLC8B1AuthorityHGNC:26175Mapping file id80024 NCBI fileEvidenceTAS
GeneSLC9A1AuthorityHGNC:11071Mapping file id6548 NCBI fileEvidenceTAS
GeneSLC9A2AuthorityHGNC:11072Mapping file id6549 NCBI fileEvidenceTAS
GeneSLC9A3AuthorityHGNC:11073Mapping file id6550 NCBI fileEvidenceTAS
GeneSLC9A4AuthorityHGNC:11077Mapping file id389015 NCBI fileEvidenceTAS
GeneSLC9A5AuthorityHGNC:11078Mapping file id6553 NCBI fileEvidenceTAS
GeneSLC9A6AuthorityHGNC:11079Mapping file id10479 NCBI fileEvidenceTAS
GeneSLC9A7AuthorityHGNC:17123Mapping file id84679 NCBI fileEvidenceTAS
GeneSLC9A8AuthorityHGNC:20728Mapping file id23315 NCBI fileEvidenceTAS
GeneSLC9A9AuthorityHGNC:20653Mapping file id285195 NCBI fileEvidenceTAS
GeneSRIAuthorityHGNC:11292Mapping file id6717 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.