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Pathway Human Homo sapiens

Extra-nuclear estrogen signaling

R-HSA-9009391 in Reactome release 97: under ESR-mediated signaling, with 77 genes placed in it by the mapping files and 2 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-9009391 (mouse), R-RNO-9009391 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 77 genes in this human pathway; showing 1 to 77, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this human pathway, page 1 of 1
GeneAKT1AuthorityHGNC:391Mapping file id207 NCBI fileEvidenceTAS
GeneAKT2AuthorityHGNC:392Mapping file id208 NCBI fileEvidenceTAS
GeneAKT3AuthorityHGNC:393Mapping file id10000 NCBI fileEvidenceTAS
GeneAREGAuthorityHGNC:651Mapping file id374 NCBI fileEvidenceTAS
GeneBCL2AuthorityHGNC:990Mapping file id596 NCBI fileEvidenceTAS
GeneBTCAuthorityHGNC:1121Mapping file id685 NCBI fileEvidenceTAS
GeneCALM1AuthorityHGNC:1442Mapping file id801 NCBI fileEvidenceTAS
GeneCALM2AuthorityHGNC:1445Mapping file id805 NCBI fileEvidenceTAS
GeneCALM3AuthorityHGNC:1449Mapping file id808 NCBI fileEvidenceTAS
GeneCAV1AuthorityHGNC:1527Mapping file id857 NCBI fileEvidenceTAS
GeneCAV2AuthorityHGNC:1528Mapping file id858 NCBI fileEvidenceTAS
GeneCCND1AuthorityHGNC:1582Mapping file id595 NCBI fileEvidenceTAS
GeneCDKN1BAuthorityHGNC:1785Mapping file id1027 NCBI fileEvidenceTAS
GeneCREB1AuthorityHGNC:2345Mapping file id1385 NCBI fileEvidenceIEA, TAS
GeneEGFAuthorityHGNC:3229Mapping file id1950 NCBI fileEvidenceTAS
GeneEGFRAuthorityHGNC:3236Mapping file id1956 NCBI fileEvidenceTAS
GeneELK1AuthorityHGNC:3321Mapping file id2002 NCBI fileEvidenceIEA, TAS
GeneEPGNAuthorityHGNC:17470Mapping file id255324 NCBI fileEvidenceTAS
GeneEREGAuthorityHGNC:3443Mapping file id2069 NCBI fileEvidenceTAS
GeneESR1AuthorityHGNC:3467Mapping file id2099 NCBI fileEvidenceTAS
GeneESR2AuthorityHGNC:3468Mapping file id2100 NCBI fileEvidenceTAS
GeneFOSAuthorityHGNC:3796Mapping file id2353 NCBI fileEvidenceTAS
GeneFOXO3AuthorityHGNC:3821Mapping file id2309 NCBI fileEvidenceTAS
GeneGNAI1AuthorityHGNC:4384Mapping file id2770 NCBI fileEvidenceTAS
GeneGNAI2AuthorityHGNC:4385Mapping file id2771 NCBI fileEvidenceTAS
GeneGNAI3AuthorityHGNC:4387Mapping file id2773 NCBI fileEvidenceTAS
GeneGNAT3AuthorityHGNC:22800Mapping file id346562 NCBI fileEvidenceTAS
GeneGNB1AuthorityHGNC:4396Mapping file id2782 NCBI fileEvidenceTAS
GeneGNB2AuthorityHGNC:4398Mapping file id2783 NCBI fileEvidenceTAS
GeneGNB3AuthorityHGNC:4400Mapping file id2784 NCBI fileEvidenceTAS
GeneGNB4AuthorityHGNC:20731Mapping file id59345 NCBI fileEvidenceTAS
GeneGNB5AuthorityHGNC:4401Mapping file id10681 NCBI fileEvidenceTAS
GeneGNG10AuthorityHGNC:4402Mapping file id2790 NCBI fileEvidenceTAS
GeneGNG11AuthorityHGNC:4403Mapping file id2791 NCBI fileEvidenceTAS
GeneGNG12AuthorityHGNC:19663Mapping file id55970 NCBI fileEvidenceTAS
GeneGNG13AuthorityHGNC:14131Mapping file id51764 NCBI fileEvidenceTAS
GeneGNG2AuthorityHGNC:4404Mapping file id54331 NCBI fileEvidenceTAS
GeneGNG3AuthorityHGNC:4405Mapping file id2785 NCBI fileEvidenceTAS
GeneGNG4AuthorityHGNC:4407Mapping file id2786 NCBI fileEvidenceTAS
GeneGNG5AuthorityHGNC:4408Mapping file id2787 NCBI fileEvidenceTAS
GeneGNG7AuthorityHGNC:4410Mapping file id2788 NCBI fileEvidenceTAS
GeneGNG8AuthorityHGNC:19664Mapping file id94235 NCBI fileEvidenceTAS
GeneGNGT1AuthorityHGNC:4411Mapping file id2792 NCBI fileEvidenceTAS
GeneGNGT2AuthorityHGNC:4412Mapping file id2793 NCBI fileEvidenceTAS
GeneHBEGFAuthorityHGNC:3059Mapping file id1839 NCBI fileEvidenceTAS
GeneHRASAuthorityHGNC:5173Mapping file id3265 NCBI fileEvidenceTAS
GeneHSP90AA1AuthorityHGNC:5253Mapping file id3320 NCBI fileEvidenceTAS
GeneHSPB1AuthorityHGNC:5246Mapping file id3315 NCBI fileEvidenceTAS
GeneIGF1RAuthorityHGNC:5465Mapping file id3480 NCBI fileEvidenceTAS
GeneKRASAuthorityHGNC:6407Mapping file id3845 NCBI fileEvidenceTAS
GeneMAPK1AuthorityHGNC:6871Mapping file id5594 NCBI fileEvidenceIEA, TAS
GeneMAPK3AuthorityHGNC:6877Mapping file id5595 NCBI fileEvidenceIEA
GeneMMP2AuthorityHGNC:7166Mapping file id4313 NCBI fileEvidenceTAS
GeneMMP3AuthorityHGNC:7173Mapping file id4314 NCBI fileEvidenceTAS
GeneMMP7AuthorityHGNC:7174Mapping file id4316 NCBI fileEvidenceTAS
GeneMMP9AuthorityHGNC:7176Mapping file id4318 NCBI fileEvidenceTAS
GeneNOS3AuthorityHGNC:7876Mapping file id4846 NCBI fileEvidenceTAS
GeneNRASAuthorityHGNC:7989Mapping file id4893 NCBI fileEvidenceTAS
GenePDPK1AuthorityHGNC:8816Mapping file id5170 NCBI fileEvidenceIEA, TAS
GenePIK3CAAuthorityHGNC:8975Mapping file id5290 NCBI fileEvidenceTAS
GenePIK3R1AuthorityHGNC:8979Mapping file id5295 NCBI fileEvidenceTAS
GenePIK3R2AuthorityHGNC:8980Mapping file id5296 NCBI fileEvidenceTAS
GenePIK3R3AuthorityHGNC:8981Mapping file id8503 NCBI fileEvidenceTAS
GenePRKCZAuthorityHGNC:9412Mapping file id5590 NCBI fileEvidenceIEA, TAS
GenePRMT1AuthorityHGNC:5187Mapping file id3276 NCBI fileEvidenceTAS
GenePTK2AuthorityHGNC:9611Mapping file id5747 NCBI fileEvidenceTAS
GeneS1PR3AuthorityHGNC:3167Mapping file id1903 NCBI fileEvidenceTAS
GeneSHC1AuthorityHGNC:10840Mapping file id6464 NCBI fileEvidenceTAS
GeneSPHK1AuthorityHGNC:11240Mapping file id8877 NCBI fileEvidenceTAS
GeneSRCAuthorityHGNC:11283Mapping file id6714 NCBI fileEvidenceTAS
GeneSRFAuthorityHGNC:11291Mapping file id6722 NCBI fileEvidenceTAS
GeneSTRNAuthorityHGNC:11424Mapping file id6801 NCBI fileEvidenceTAS
GeneTGFAAuthorityHGNC:11765Mapping file id7039 NCBI fileEvidenceTAS
GeneUHMK1AuthorityHGNC:19683Mapping file id127933 NCBI fileEvidenceTAS
GeneXPO1AuthorityHGNC:12825Mapping file id7514 NCBI fileEvidenceTAS
GeneZDHHC21AuthorityHGNC:20750Mapping file id340481 NCBI fileEvidenceTAS
GeneZDHHC7AuthorityHGNC:18459Mapping file id55625 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.