Skip to content

Create an account and get up to 25% off.

Order

Pathway Mouse Mus musculus

Read this first

Every mouse pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Signaling by Receptor Tyrosine Kinases

R-MMU-9006934 in Reactome release 97: under Signal Transduction, with 419 genes placed in it by the mapping files and 14 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9006934 (human), R-RNO-9006934 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every mouse pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this mouse pathway

The mapping files place 419 genes in this mouse pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this mouse pathway, page 1 of 5
GeneAampAuthority227290Mapping file id227290 NCBI fileEvidenceIEA
GeneAbi1Authority11308Mapping file id11308 NCBI fileEvidenceIEA
GeneAbi2Authority329165Mapping file id329165 NCBI fileEvidenceIEA
GeneActbAuthority11461Mapping file id11461 NCBI fileEvidenceIEA
GeneActg1Authority11465Mapping file id11465 NCBI fileEvidenceIEA
GeneAkt1Authority11651Mapping file id11651 NCBI fileEvidenceIEA
GeneAkt2Authority11652Mapping file id11652 NCBI fileEvidenceIEA
GeneAkt3Authority23797Mapping file id23797 NCBI fileEvidenceIEA
GeneAlkAuthority11682Mapping file id11682 NCBI fileEvidenceIEA
GeneAlkal1Authority620393Mapping file id620393 NCBI fileEvidenceIEA
GeneAlkal2Authority100294583Mapping file id100294583 NCBI fileEvidenceIEA
GeneAp2a1Authority11771Mapping file id11771 NCBI fileEvidenceIEA
GeneAp2a2Authority11772Mapping file id11772 NCBI fileEvidenceIEA
GeneAp2b1Authority71770Mapping file id71770 NCBI fileEvidenceIEA
GeneAp2m1Authority11773Mapping file id11773 NCBI fileEvidenceIEA
GeneAp2s1Authority232910Mapping file id232910 NCBI fileEvidenceIEA
GeneAph1aAuthority226548Mapping file id226548 NCBI fileEvidenceIEA
GeneAph1bAuthority208117Mapping file id208117 NCBI fileEvidenceIEA
GeneAregAuthority11839Mapping file id11839 NCBI fileEvidenceIEA
GeneArf6Authority11845Mapping file id11845 NCBI fileEvidenceIEA
GeneArhgef7Authority54126Mapping file id54126 NCBI fileEvidenceIEA
GeneAtf1Authority11908Mapping file id11908 NCBI fileEvidenceIEA
GeneAtp6ap1Authority54411Mapping file id54411 NCBI fileEvidenceIEA
GeneAtp6v0a1Authority11975Mapping file id11975 NCBI fileEvidenceIEA
GeneAtp6v0a2Authority21871Mapping file id21871 NCBI fileEvidenceIEA
GeneAtp6v0a4Authority140494Mapping file id140494 NCBI fileEvidenceIEA
GeneAtp6v0bAuthority114143Mapping file id114143 NCBI fileEvidenceIEA
GeneAtp6v0cAuthority11984Mapping file id11984 NCBI fileEvidenceIEA
GeneAtp6v0d1Authority11972Mapping file id11972 NCBI fileEvidenceIEA
GeneAtp6v0d2Authority242341Mapping file id242341 NCBI fileEvidenceIEA
GeneAtp6v0eAuthority11974Mapping file id11974 NCBI fileEvidenceIEA
GeneAtp6v0e2Authority76252Mapping file id76252 NCBI fileEvidenceIEA
GeneAtp6v1aAuthority11964Mapping file id11964 NCBI fileEvidenceIEA
GeneAtp6v1b1Authority110935Mapping file id110935 NCBI fileEvidenceIEA
GeneAtp6v1b2Authority11966Mapping file id11966 NCBI fileEvidenceIEA
GeneAtp6v1c1Authority66335Mapping file id66335 NCBI fileEvidenceIEA
GeneAtp6v1c2Authority68775Mapping file id68775 NCBI fileEvidenceIEA
GeneAtp6v1dAuthority73834Mapping file id73834 NCBI fileEvidenceIEA
GeneAtp6v1e1Authority11973Mapping file id11973 NCBI fileEvidenceIEA
GeneAtp6v1e2Authority74915Mapping file id74915 NCBI fileEvidenceIEA
GeneAtp6v1fAuthority66144Mapping file id66144 NCBI fileEvidenceIEA
GeneAtp6v1g1Authority66290Mapping file id66290 NCBI fileEvidenceIEA
GeneAtp6v1g2Authority66237Mapping file id66237 NCBI fileEvidenceIEA
GeneAtp6v1g3Authority338375Mapping file id338375 NCBI fileEvidenceIEA
GeneAtp6v1hAuthority108664Mapping file id108664 NCBI fileEvidenceIEA
GeneAxlAuthority26362Mapping file id26362 NCBI fileEvidenceIEA
GeneBaiap2Authority108100Mapping file id108100 NCBI fileEvidenceIEA
GeneBcar1Authority12927Mapping file id12927 NCBI fileEvidenceIEA
GeneBdnfAuthority12064Mapping file id12064 NCBI fileEvidenceIEA
GeneBrafAuthority109880Mapping file id109880 NCBI fileEvidenceIEA
GeneBrk1Authority101314Mapping file id101314 NCBI fileEvidenceIEA
GeneBtcAuthority12223Mapping file id12223 NCBI fileEvidenceIEA
GeneCalm1Authority12313Mapping file id12313 NCBI fileEvidenceIEA
GeneCalm2Authority12314Mapping file idENSMUSG00000036438 Ensembl fileEvidenceIEA
GeneCalm3Authority12315Mapping file idENSMUSG00000019370 Ensembl fileEvidenceIEA
GeneCav1Authority12389Mapping file id12389 NCBI fileEvidenceIEA
GeneCblAuthority12402Mapping file id12402 NCBI fileEvidenceIEA
GeneCdc37Authority12539Mapping file id12539 NCBI fileEvidenceIEA
GeneCdc42Authority12540Mapping file id12540 NCBI fileEvidenceIEA
GeneCdh5Authority12562Mapping file id12562 NCBI fileEvidenceIEA
GeneChd4Authority107932Mapping file id107932 NCBI fileEvidenceIEA
GeneChek1Authority12649Mapping file id12649 NCBI fileEvidenceIEA
GeneCilpAuthority214425Mapping file id214425 NCBI fileEvidenceIEA
GeneCltaAuthority12757Mapping file idENSMUSG00000028478 Ensembl fileEvidenceIEA
GeneCltcAuthority67300Mapping file id67300 NCBI fileEvidenceIEA
GeneCma1Authority17228Mapping file id17228 NCBI fileEvidenceIEA
GeneCol11a1Authority12814Mapping file id12814 NCBI fileEvidenceIEA
GeneCol11a2Authority12815Mapping file id12815 NCBI fileEvidenceIEA
GeneCol24a1Authority71355Mapping file id71355 NCBI fileEvidenceIEA
GeneCol27a1Authority373864Mapping file id373864 NCBI fileEvidenceIEA
GeneCol2a1Authority12824Mapping file id12824 NCBI fileEvidenceIEA
GeneCol3a1Authority12825Mapping file id12825 NCBI fileEvidenceIEA
GeneCol4a1Authority12826Mapping file id12826 NCBI fileEvidenceIEA
GeneCol4a2Authority12827Mapping file id12827 NCBI fileEvidenceIEA
GeneCol5a1Authority12831Mapping file id12831 NCBI fileEvidenceIEA
GeneCol5a2Authority12832Mapping file id12832 NCBI fileEvidenceIEA
GeneCol5a3Authority53867Mapping file id53867 NCBI fileEvidenceIEA
GeneCol6a1Authority12833Mapping file id12833 NCBI fileEvidenceIEA
GeneCol6a2Authority12834Mapping file id12834 NCBI fileEvidenceIEA
GeneCol6a3Authority12835Mapping file idENSMUSG00000048126 Ensembl fileEvidenceIEA
GeneCol6a5Authority665033Mapping file id665033 NCBI fileEvidenceIEA
GeneCol6a6Authority245026Mapping file id245026 NCBI fileEvidenceIEA
GeneCol9a1Authority12839Mapping file id12839 NCBI fileEvidenceIEA
GeneCol9a2Authority12840Mapping file idENSMUSG00000028626 Ensembl fileEvidenceIEA
GeneCol9a3Authority12841Mapping file id12841 NCBI fileEvidenceIEA
GeneCreb1Authority12912Mapping file id12912 NCBI fileEvidenceIEA
GeneCrkAuthority12928Mapping file id12928 NCBI fileEvidenceIEA
GeneCrklAuthority12929Mapping file id12929 NCBI fileEvidenceIEA
GeneCskAuthority12988Mapping file id12988 NCBI fileEvidenceIEA
GeneCtnna1Authority12385Mapping file id12385 NCBI fileEvidenceIEA
GeneCtnnb1Authority12387Mapping file id12387 NCBI fileEvidenceIEA
GeneCtnnd1Authority12388Mapping file id12388 NCBI fileEvidenceIEA
GeneCtsdAuthority13033Mapping file id13033 NCBI fileEvidenceIEA
GeneCul5Authority75717Mapping file id75717 NCBI fileEvidenceIEA
GeneCybaAuthority13057Mapping file id13057 NCBI fileEvidenceIEA
GeneCybbAuthority13058Mapping file id13058 NCBI fileEvidenceIEA
GeneCyfip1Authority20430Mapping file id20430 NCBI fileEvidenceIEA
GeneCyfip2Authority76884Mapping file id76884 NCBI fileEvidenceIEA
GeneDiaph1Authority13367Mapping file id13367 NCBI fileEvidenceIEA
GeneDnal4Authority54152Mapping file id54152 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 87,729 mouse pairs both place.

  • Reactome mapping files, the mouse rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the mouse pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.