Pathway Rat Rattus norvegicus
Read this first
Platelet degranulation
R-RNO-114608 in Reactome release 97: under Response to elevated platelet cytosolic Ca2+, with 123 genes placed in it by the mapping files and 0 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-114608 (human), R-MMU-114608 (mouse). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists.
[R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments.
[R11]
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this rat pathway
The mapping files place 123 genes in this rat pathway; showing 1 to 100, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GeneA1bg | Authority140656 | Mapping file id140656 NCBI file | EvidenceIEA |
| GeneA2m | Authority24153 | Mapping file id24153 NCBI file | EvidenceIEA |
| GeneAbcc4 | Authority170924 | Mapping file id170924 NCBI file | EvidenceIEA |
| GeneActg1 | Authority287876 | Mapping file id287876 NCBI file | EvidenceIEA |
| GeneActn1 | Authority81634 | Mapping file id81634 NCBI file | EvidenceIEA |
| GeneActn2 | Authority291245 | Mapping file idENSRNOG00000017833 Ensembl file | EvidenceIEA |
| GeneActn4 | Authority63836 | Mapping file id63836 NCBI file | EvidenceIEA |
| GeneAhsg | Authority25373 | Mapping file id25373 NCBI file | EvidenceIEA |
| GeneAlb | Authority24186 | Mapping file id24186 NCBI file | EvidenceIEA |
| GeneAldoa | Authority24189 | Mapping file id24189 NCBI file | EvidenceIEA |
| GeneAnxa5 | Authority25673 | Mapping file id25673 NCBI file | EvidenceIEA |
| GeneAplp2 | Authority64312 | Mapping file idENSRNOG00000047179 Ensembl file | EvidenceIEA |
| GeneApoa1 | Authority25081 | Mapping file id25081 NCBI file | EvidenceIEA |
| GeneApoh | Authority287774 | Mapping file idENSRNOG00000003566 Ensembl file | EvidenceIEA |
| GeneApool | Authority317191 | Mapping file idENSRNOG00000082020 Ensembl file | EvidenceIEA |
| GeneApp | Authority54226 | Mapping file id54226 NCBI file | EvidenceIEA |
| GeneBrpf3 | Authority309647 | Mapping file idENSRNOG00000028641 Ensembl file | EvidenceIEA |
| GeneCalm1 | Authority24242 | Mapping file idENSRNOG00000072513 Ensembl file | EvidenceIEA |
| GeneCalm2 | Authority50663 | Mapping file idENSRNOG00000067086 Ensembl file | EvidenceIEA |
| GeneCalm3 | Authority24244 | Mapping file id24244 NCBI file | EvidenceIEA |
| GeneCd109 | Authority363104 | Mapping file id363104 NCBI file | EvidenceIEA |
| GeneCd36 | Authority29184 | Mapping file idENSRNOG00000078327 Ensembl file | EvidenceIEA |
| GeneCd36l1 | Authority499985 | Mapping file idENSRNOG00000005906 Ensembl file | EvidenceIEA |
| GeneCd63 | Authority29186 | Mapping file id29186 NCBI file | EvidenceIEA |
| GeneCd9 | Authority24936 | Mapping file id24936 NCBI file | EvidenceIEA |
| GeneCdc37l1 | Authority293886 | Mapping file id293886 NCBI file | EvidenceIEA |
| GeneCfd | Authority54249 | Mapping file id54249 NCBI file | EvidenceIEA |
| GeneChid1 | Authority293628 | Mapping file id293628 NCBI file | EvidenceIEA |
| GeneClu | Authority24854 | Mapping file id24854 NCBI file | EvidenceIEA |
| GeneCtsw | Authority293676 | Mapping file id293676 NCBI file | EvidenceIEA |
| GeneCyb5r1 | Authority304805 | Mapping file id304805 NCBI file | EvidenceIEA |
| GeneCyrib | Authority299909 | Mapping file id299909 NCBI file | EvidenceIEA |
| GeneEcm1 | Authority116662 | Mapping file id116662 NCBI file | EvidenceIEA |
| GeneEgf | Authority25313 | Mapping file id25313 NCBI file | EvidenceIEA |
| GeneEndod1 | Authority363015 | Mapping file id363015 NCBI file | EvidenceIEA |
| GeneF13a1 | Authority60327 | Mapping file id60327 NCBI file | EvidenceIEA |
| GeneF8 | Authority302470 | Mapping file id302470 NCBI file | EvidenceIEA |
| GeneFam3c | Authority312159 | Mapping file id312159 NCBI file | EvidenceIEA |
| GeneFermt3 | Authority309186 | Mapping file id309186 NCBI file | EvidenceIEA |
| GeneFga | Authority361969 | Mapping file idENSRNOG00000024848 Ensembl file | EvidenceIEA |
| GeneFgb | Authority24366 | Mapping file id24366 NCBI file | EvidenceIEA |
| GeneFgg | Authority24367 | Mapping file id24367 NCBI file | EvidenceIEA |
| GeneFlna | Authority293860 | Mapping file id293860 NCBI file | EvidenceIEA |
| GeneFn1 | Authority25661 | Mapping file idENSRNOG00000014288 Ensembl file | EvidenceIEA |
| GeneGas6 | Authority58935 | Mapping file idENSRNOG00000018233 Ensembl file | EvidenceIEA |
| GeneGtpbp2 | Authority363195 | Mapping file id363195 NCBI file | EvidenceIEA |
| GeneHabp4 | Authority361196 | Mapping file id361196 NCBI file | EvidenceIEA |
| GeneHgf | Authority24446 | Mapping file id24446 NCBI file | EvidenceIEA |
| GeneHrg | Authority171016 | Mapping file id171016 NCBI file | EvidenceIEA |
| GeneHrgl1 | Authority681544 | Mapping file id681544 NCBI file | EvidenceIEA |
| GeneIgf1 | Authority24482 | Mapping file id24482 NCBI file | EvidenceIEA |
| GeneIgf2 | Authority24483 | Mapping file id24483 NCBI file | EvidenceIEA |
| GeneIslr | Authority686539 | Mapping file id686539 NCBI file | EvidenceIEA |
| GeneItga2b | Authority685269 | Mapping file id685269 NCBI file | EvidenceIEA |
| GeneItgb3 | Authority29302 | Mapping file id29302 NCBI file | EvidenceIEA |
| GeneItih3 | Authority50693 | Mapping file id50693 NCBI file | EvidenceIEA |
| GeneItih4 | Authority54404 | Mapping file id54404 NCBI file | EvidenceIEA |
| GeneKng2 | Authority24903 | Mapping file idENSRNOG00000065935 Ensembl file | EvidenceIEA |
| GeneKng2l1 | Authority25087 | Mapping file id25087 NCBI file | EvidenceIEA |
| GeneLamp2 | Authority24944 | Mapping file id24944 NCBI file | EvidenceIEA |
| GeneLefty1 | Authority498299 | Mapping file id498299 NCBI file | EvidenceIEA |
| GeneLefty2 | Authority289316 | Mapping file id289316 NCBI file | EvidenceIEA |
| GeneLgals3bp | Authority245955 | Mapping file id245955 NCBI file | EvidenceIEA |
| GeneLhfpl2 | Authority294643 | Mapping file id294643 NCBI file | EvidenceIEA |
| GeneLy6g6f | Authority309609 | Mapping file id309609 NCBI file | EvidenceIEA |
| GeneMaged2 | Authority113947 | Mapping file id113947 NCBI file | EvidenceIEA |
| GeneManf | Authority315989 | Mapping file id315989 NCBI file | EvidenceIEA |
| GeneMmrn1 | Authority500152 | Mapping file id500152 NCBI file | EvidenceIEA |
| GeneNhlrc2 | Authority307986 | Mapping file id307986 NCBI file | EvidenceIEA |
| GeneOla1 | Authority296488 | Mapping file id296488 NCBI file | EvidenceIEA |
| GeneOrm1 | Authority24614 | Mapping file id24614 NCBI file | EvidenceIEA |
| GenePcdh7 | Authority360942 | Mapping file id360942 NCBI file | EvidenceIEA |
| GenePcyox1l | Authority307396 | Mapping file id307396 NCBI file | EvidenceIEA |
| GenePdgfa | Authority25266 | Mapping file id25266 NCBI file | EvidenceIEA |
| GenePdgfb | Authority24628 | Mapping file id24628 NCBI file | EvidenceIEA |
| GenePecam1 | Authority29583 | Mapping file id29583 NCBI file | EvidenceIEA |
| GenePf4 | Authority360918 | Mapping file id360918 NCBI file | EvidenceIEA |
| GenePhactr2 | Authority308291 | Mapping file id308291 NCBI file | EvidenceIEA |
| GenePlek | Authority364206 | Mapping file id364206 NCBI file | EvidenceIEA |
| GenePlg | Authority85253 | Mapping file id85253 NCBI file | EvidenceIEA |
| GenePpbp | Authority246358 | Mapping file id246358 NCBI file | EvidenceIEA |
| GenePros1 | Authority81750 | Mapping file idENSRNOG00000048723 Ensembl file | EvidenceIEA |
| GenePsap | Authority25524 | Mapping file id25524 NCBI file | EvidenceIEA |
| GeneQsox1 | Authority84491 | Mapping file id84491 NCBI file | EvidenceIEA |
| GeneRab27b | Authority84590 | Mapping file id84590 NCBI file | EvidenceIEA |
| GeneRarres2 | Authority297073 | Mapping file idENSRNOG00000024705 Ensembl file | EvidenceIEA |
| GeneSccpdh | Authority305021 | Mapping file id305021 NCBI file | EvidenceIEA |
| GeneScg3 | Authority116635 | Mapping file id116635 NCBI file | EvidenceIEA |
| GeneSelp | Authority25651 | Mapping file id25651 NCBI file | EvidenceIEA |
| GeneSerpina1 | Authority24648 | Mapping file id24648 NCBI file | EvidenceIEA |
| GeneSerpina3l | Authority299282 | Mapping file idENSRNOG00000010478 Ensembl file | EvidenceIEA |
| GeneSerpina3n | Authority24795 | Mapping file id24795 NCBI file | EvidenceIEA |
| GeneSerpina4 | Authority246328 | Mapping file id246328 NCBI file | EvidenceIEA |
| GeneSerpine1 | Authority24617 | Mapping file id24617 NCBI file | EvidenceIEA |
| GeneSerpinf2 | Authority287527 | Mapping file idENSRNOG00000003233 Ensembl file | EvidenceIEA |
| GeneSerping1 | Authority295703 | Mapping file id295703 NCBI file | EvidenceIEA |
| GeneSod1 | Authority24786 | Mapping file id24786 NCBI file | EvidenceIEA |
| GeneSparc | Authority24791 | Mapping file id24791 NCBI file | EvidenceIEA |
| GeneSpp2 | Authority94168 | Mapping file id94168 NCBI file | EvidenceIEA |
| GeneSrgn | Authority56782 | Mapping file id56782 NCBI file | EvidenceIEA |
Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.
- Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Children
None: no pathway of this release's list names this one as a parent.
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.