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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Toll Like Receptor 10 (TLR10) Cascade

R-RNO-168142 in Reactome release 97: under Toll-like Receptor Cascades, with 86 genes placed in it by the mapping files and 1 child pathway in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-168142 (human), R-MMU-168142 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 86 genes in this rat pathway; showing 1 to 86, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAgerAuthority81722Mapping file idENSRNOG00000000439 Ensembl fileEvidenceIEA
GeneAlpk1Authority310879Mapping file idENSRNOG00000022636 Ensembl fileEvidenceIEA
GeneAppAuthority54226Mapping file id54226 NCBI fileEvidenceIEA
GeneAtf1Authority315305Mapping file id315305 NCBI fileEvidenceIEA
GeneAtf2Authority81647Mapping file id81647 NCBI fileEvidenceIEA
GeneBtrcAuthority361765Mapping file id361765 NCBI fileEvidenceIEA
GeneCasp8Authority64044Mapping file id64044 NCBI fileEvidenceIEA
GeneChukAuthority309361Mapping file id309361 NCBI fileEvidenceIEA
GeneCreb1Authority81646Mapping file id81646 NCBI fileEvidenceIEA
GeneCul1Authority362356Mapping file idENSRNOG00000005310 Ensembl fileEvidenceIEA
GeneDusp3Authority498003Mapping file idENSRNOG00000036798 Ensembl fileEvidenceIEA
GeneDusp4Authority60587Mapping file id60587 NCBI fileEvidenceIEA
GeneDusp6Authority116663Mapping file id116663 NCBI fileEvidenceIEA
GeneDusp7Authority300980Mapping file id300980 NCBI fileEvidenceIEA
GeneEcsitAuthority300447Mapping file id300447 NCBI fileEvidenceIEA
GeneFbxw11Authority303024Mapping file id303024 NCBI fileEvidenceIEA
GeneFosAuthority314322Mapping file id314322 NCBI fileEvidenceIEA
GeneHmgb1-ps33Authority679571Mapping file idENSRNOG00000051482 Ensembl fileEvidenceIEA
GeneHmgb1-ps34Authority120099223Mapping file idENSRNOG00000068306 Ensembl fileEvidenceIEA
GeneHmgb1-ps8Authority690117Mapping file idENSRNOG00000058908 Ensembl fileEvidenceIEA
GeneIkbkbAuthority84351Mapping file id84351 NCBI fileEvidenceIEA
GeneIkbkgAuthority309295Mapping file id309295 NCBI fileEvidenceIEA
GeneIrak1Authority363520Mapping file id363520 NCBI fileEvidenceIEA
GeneIrak2Authority362418Mapping file id362418 NCBI fileEvidenceIEA
GeneJunAuthority24516Mapping file id24516 NCBI fileEvidenceIEA
GeneKxd1Authority498606Mapping file idENSRNOG00000019971 Ensembl fileEvidenceIEA
GeneLrrc14Authority500900Mapping file id500900 NCBI fileEvidenceIEA
GeneMap2k3Authority303200Mapping file idENSRNOG00000065992 Ensembl fileEvidenceIEA
GeneMap2k6Authority114495Mapping file id114495 NCBI fileEvidenceIEA
GeneMap2k7Authority363855Mapping file id363855 NCBI fileEvidenceIEA
GeneMap3k1Authority116667Mapping file id116667 NCBI fileEvidenceIEA
GeneMap3k7Authority313121Mapping file id313121 NCBI fileEvidenceIEA
GeneMap3k8Authority116596Mapping file id116596 NCBI fileEvidenceIEA
GeneMapk1Authority116590Mapping file id116590 NCBI fileEvidenceIEA
GeneMapk10Authority25272Mapping file id25272 NCBI fileEvidenceIEA
GeneMapk11Authority689314Mapping file idENSRNOG00000006984 Ensembl fileEvidenceIEA
GeneMapk3Authority50689Mapping file id50689 NCBI fileEvidenceIEA
GeneMapk7Authority114509Mapping file idENSRNOG00000047907 Ensembl fileEvidenceIEA
GeneMapk8Authority116554Mapping file id116554 NCBI fileEvidenceIEA
GeneMapk9Authority50658Mapping file id50658 NCBI fileEvidenceIEA
GeneMapkapk2Authority289014Mapping file id289014 NCBI fileEvidenceIEA
GeneMapkapk3Authority315994Mapping file id315994 NCBI fileEvidenceIEA
GeneN4bp1Authority291921Mapping file id291921 NCBI fileEvidenceIEA
GeneNfkb1Authority81736Mapping file id81736 NCBI fileEvidenceIEA
GeneNfkb2Authority309452Mapping file id309452 NCBI fileEvidenceIEA
GeneNfkbiaAuthority25493Mapping file id25493 NCBI fileEvidenceIEA
GeneNfkbibAuthority81525Mapping file idENSRNOG00000020063 Ensembl fileEvidenceIEA
GeneNkiras2Authority287707Mapping file id287707 NCBI fileEvidenceIEA
GeneNlrc5Authority291861Mapping file id291861 NCBI fileEvidenceIEA
GeneNlrx1Authority315599Mapping file id315599 NCBI fileEvidenceIEA
GeneNod1Authority500133Mapping file id500133 NCBI fileEvidenceIEA
GeneNod2Authority291912Mapping file idENSRNOG00000014124 Ensembl fileEvidenceIEA
GenePeli1Authority305549Mapping file id305549 NCBI fileEvidenceIEA
GenePeli2Authority305835Mapping file idENSRNOG00000012363 Ensembl fileEvidenceIEA
GenePeli3Authority309157Mapping file id309157 NCBI fileEvidenceIEA
GenePpp2caAuthority24672Mapping file id24672 NCBI fileEvidenceIEA
GenePpp2cbAuthority24673Mapping file id24673 NCBI fileEvidenceIEA
GenePpp2r1aAuthority117281Mapping file id117281 NCBI fileEvidenceIEA
GenePpp2r1bAuthority315648Mapping file id315648 NCBI fileEvidenceIEA
GenePpp2r5dAuthority363193Mapping file id363193 NCBI fileEvidenceIEA
GeneRelaAuthority309165Mapping file idENSRNOG00000030888 Ensembl fileEvidenceIEA
GeneRipk2Authority362491Mapping file id362491 NCBI fileEvidenceIEA
GeneRps27aAuthority100912032Mapping file id100912032 NCBI fileEvidenceIEA
GeneRps6ka1Authority81771Mapping file id81771 NCBI fileEvidenceIEA
GeneRps6ka2Authority117269Mapping file id117269 NCBI fileEvidenceIEA
GeneRps6ka3Authority501560Mapping file id501560 NCBI fileEvidenceIEA
GeneRps6ka5Authority314384Mapping file idENSRNOG00000004362 Ensembl fileEvidenceIEA
GeneS100bAuthority25742Mapping file id25742 NCBI fileEvidenceIEA
GeneSkp1Authority287280Mapping file id287280 NCBI fileEvidenceIEA
GeneTab1Authority315139Mapping file idENSRNOG00000017285 Ensembl fileEvidenceIEA
GeneTab2Authority308267Mapping file id308267 NCBI fileEvidenceIEA
GeneTab3Authority317546Mapping file id317546 NCBI fileEvidenceIEA
GeneTifaAuthority310877Mapping file id310877 NCBI fileEvidenceIEA
GeneTlr10Authority305355Mapping file id305355 NCBI fileEvidenceIEA
GeneTnip2Authority305451Mapping file idENSRNOG00000013805 Ensembl fileEvidenceIEA
GeneTraf2Authority311786Mapping file idENSRNOG00000006238 Ensembl fileEvidenceIEA
GeneTraf6Authority311245Mapping file id311245 NCBI fileEvidenceIEA
GeneUba52Authority64156Mapping file id64156 NCBI fileEvidenceIEA
GeneUbbAuthority192255Mapping file id192255 NCBI fileEvidenceIEA
GeneUbcAuthority50522Mapping file id50522 NCBI fileEvidenceIEA
GeneUbe2nAuthority116725Mapping file id116725 NCBI fileEvidenceIEA
GeneUbe2v1Authority296390Mapping file idENSRNOG00000025580 Ensembl fileEvidenceIEA
GeneUbe2v1l1Authority679539Mapping file idENSRNOG00000067007 Ensembl fileEvidenceIEA
GeneUsp14Authority291796Mapping file idENSRNOG00000014981 Ensembl fileEvidenceIEA
GeneUsp18Authority312688Mapping file id312688 NCBI fileEvidenceIEA
GeneVrk3Authority361565Mapping file idENSRNOG00000026517 Ensembl fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.