Skip to content
Order

Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

RMTs methylate histone arginines

R-RNO-3214858 in Reactome release 97: under Chromatin modifying enzymes, with 50 genes placed in it by the mapping files and 0 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-3214858 (human), R-MMU-3214858 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 50 genes in this rat pathway; showing 1 to 50, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneActl6aAuthority361925Mapping file id361925 NCBI fileEvidenceIEA
GeneActl6bAuthority288563Mapping file id288563 NCBI fileEvidenceIEA
GeneArid1aAuthority297867Mapping file id297867 NCBI fileEvidenceIEA
GeneArid1bAuthority282546Mapping file idENSRNOG00000017030 Ensembl fileEvidenceIEA
GeneCarm1Authority363026Mapping file id363026 NCBI fileEvidenceIEA
GeneCcnd1Authority58919Mapping file id58919 NCBI fileEvidenceIEA
GeneCdk4Authority94201Mapping file id94201 NCBI fileEvidenceIEA
GeneCoprsAuthority290925Mapping file id290925 NCBI fileEvidenceIEA
GeneDnmt3aAuthority444984Mapping file id444984 NCBI fileEvidenceIEA
GeneH2ac1Authority24828Mapping file id24828 NCBI fileEvidenceIEA
GeneH2ac10Authority120097726Mapping file idENSRNOG00000075564 Ensembl fileEvidenceIEA
GeneH2ac18Authority365877Mapping file id365877 NCBI fileEvidenceIEA
GeneH2ac25Authority64646Mapping file id64646 NCBI fileEvidenceIEA
GeneH2ac4Authority680615Mapping file id680615 NCBI fileEvidenceIEA
GeneH3c1Authority679994Mapping file id679994 NCBI fileEvidenceIEA
GeneH3c10Authority291159Mapping file id291159 NCBI fileEvidenceIEA
GeneH3c13Authority684762Mapping file idENSRNOG00000080043 Ensembl fileEvidenceIEA
GeneH3c15Authority310678Mapping file idENSRNOG00000070591 Ensembl fileEvidenceIEA
GeneH4c1Authority291152Mapping file id291152 NCBI fileEvidenceIEA
GeneH4c14Authority295277Mapping file id295277 NCBI fileEvidenceIEA
GeneH4c8Authority64627Mapping file id64627 NCBI fileEvidenceIEA
GeneHist1h2ahAuthority502125Mapping file id502125 NCBI fileEvidenceIEA
Genehist1h2ail2Authority502129Mapping file idENSRNOG00000074453 Ensembl fileEvidenceIEA
GeneHist1h2al1Authority103690190Mapping file id103690190 NCBI fileEvidenceIEA
GeneHist1h2anAuthority306970Mapping file idENSRNOG00000048264 Ensembl fileEvidenceIEA
GeneHist1h2aoAuthority364723Mapping file idENSRNOG00000066473 Ensembl fileEvidenceIEA
GeneHist1h3bAuthority680498Mapping file id680498 NCBI fileEvidenceIEA
GeneLOC147995116Authority147995116Mapping file idENSRNOG00000067648 Ensembl fileEvidenceIEA
GeneLOC148000144Authority148000144Mapping file idENSRNOG00000065263 Ensembl fileEvidenceIEA
GeneLOC148000145Authority148000145Mapping file idENSRNOG00000066835 Ensembl fileEvidenceIEA
GeneLOC148000146Authority148000146Mapping file idENSRNOG00000070513 Ensembl fileEvidenceIEA
GeneLOC148000156Authority148000156Mapping file idENSRNOG00000064755 Ensembl fileEvidenceIEA
GenePbrm1Authority306254Mapping file idENSRNOG00000028227 Ensembl fileEvidenceIEA
GenePrmt1Authority60421Mapping file id60421 NCBI fileEvidenceIEA
GenePrmt3Authority89820Mapping file id89820 NCBI fileEvidenceIEA
GenePrmt5Authority364382Mapping file idENSRNOG00000012046 Ensembl fileEvidenceIEA
GenePrmt6Authority295384Mapping file id295384 NCBI fileEvidenceIEA
GenePrmt7Authority361402Mapping file id361402 NCBI fileEvidenceIEA
GeneRbbp7Authority83712Mapping file id83712 NCBI fileEvidenceIEA
GeneRps2Authority83789Mapping file id83789 NCBI fileEvidenceIEA
GeneSmarca2Authority361745Mapping file idENSRNOG00000011931 Ensembl fileEvidenceIEA
GeneSmarcb1Authority361825Mapping file id361825 NCBI fileEvidenceIEA
GeneSmarcc1Authority301020Mapping file id301020 NCBI fileEvidenceIEA
GeneSmarcc2Authority685179Mapping file idENSRNOG00000031135 Ensembl fileEvidenceIEA
GeneSmarcd1Authority363002Mapping file idENSRNOG00000061572 Ensembl fileEvidenceIEA
GeneSmarcd2Authority83833Mapping file id83833 NCBI fileEvidenceIEA
GeneSmarcd3Authority296732Mapping file id296732 NCBI fileEvidenceIEA
GeneSmarce1Authority303518Mapping file id303518 NCBI fileEvidenceIEA
GeneWdr5Authority362093Mapping file id362093 NCBI fileEvidenceIEA
GeneWdr77Authority310769Mapping file id310769 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Children

None: no pathway of this release's list names this one as a parent.

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.