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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

Signaling by Rho GTPases, Miro GTPases and RHOBTB3

R-RNO-9716542 in Reactome release 97: under Signal Transduction, with 629 genes placed in it by the mapping files and 3 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9716542 (human), R-MMU-9716542 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 629 genes in this rat pathway; showing 301 to 400, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 4 of 7
GeneKctd13Authority293497Mapping file id293497 NCBI fileEvidenceIEA
GeneKdm1aAuthority500569Mapping file id500569 NCBI fileEvidenceIEA
GeneKdm4cAuthority298144Mapping file id298144 NCBI fileEvidenceIEA
GeneKidins220Authority116478Mapping file id116478 NCBI fileEvidenceIEA
GeneKif14Authority360849Mapping file id360849 NCBI fileEvidenceIEA
GeneKif18aAuthority362186Mapping file idENSRNOG00000005037 Ensembl fileEvidenceIEA
GeneKif2aAuthority84391Mapping file idENSRNOG00000014000 Ensembl fileEvidenceIEA
GeneKif2bAuthority287624Mapping file id287624 NCBI fileEvidenceIEA
GeneKif2cAuthority171529Mapping file idENSRNOG00000019100 Ensembl fileEvidenceIEA
GeneKif5aAuthority314906Mapping file id314906 NCBI fileEvidenceIEA
GeneKif5bAuthority117550Mapping file id117550 NCBI fileEvidenceIEA
GeneKlc1Authority171041Mapping file id171041 NCBI fileEvidenceIEA
GeneKlc2Authority309159Mapping file idENSRNOG00000020299 Ensembl fileEvidenceIEA
GeneKlc3Authority171549Mapping file id171549 NCBI fileEvidenceIEA
GeneKlc4Authority316226Mapping file id316226 NCBI fileEvidenceIEA
GeneKnl1Authority311327Mapping file idENSRNOG00000060100 Ensembl fileEvidenceIEA
GeneKntc1Authority304477Mapping file id304477 NCBI fileEvidenceIEA
GeneKtn1Authority361029Mapping file id361029 NCBI fileEvidenceIEA
GeneLamtor1Authority308869Mapping file id308869 NCBI fileEvidenceIEA
GeneLamtor1l1Authority100361543Mapping file idENSRNOG00000004319 Ensembl fileEvidenceIEA
GeneLbrAuthority89789Mapping file idENSRNOG00000052574 Ensembl fileEvidenceIEA
GeneLckAuthority313050Mapping file id313050 NCBI fileEvidenceIEA
GeneLetm1Authority305457Mapping file id305457 NCBI fileEvidenceIEA
GeneLimk1Authority65172Mapping file idENSRNOG00000001470 Ensembl fileEvidenceIEA
GeneLin7bAuthority60377Mapping file id60377 NCBI fileEvidenceIEA
GeneLman1Authority116666Mapping file id116666 NCBI fileEvidenceIEA
GeneLmnb1Authority116685Mapping file id116685 NCBI fileEvidenceIEA
GeneLOC147995116Authority147995116Mapping file idENSRNOG00000067648 Ensembl fileEvidenceIEA
GeneLOC148000144Authority148000144Mapping file idENSRNOG00000065263 Ensembl fileEvidenceIEA
GeneLOC148000145Authority148000145Mapping file idENSRNOG00000066835 Ensembl fileEvidenceIEA
GeneLOC148000146Authority148000146Mapping file idENSRNOG00000070513 Ensembl fileEvidenceIEA
GeneLOC148000156Authority148000156Mapping file idENSRNOG00000064755 Ensembl fileEvidenceIEA
GeneLOC148007825Authority148007825Mapping file idENSRNOG00000020446 Ensembl fileEvidenceIEA
GeneLrrc41Authority362566Mapping file id362566 NCBI fileEvidenceIEA
GeneMaco1Authority313618Mapping file id313618 NCBI fileEvidenceIEA
GeneMad1l1Authority680006Mapping file idENSRNOG00000001265 Ensembl fileEvidenceIEA
GeneMad2l1Authority297176Mapping file id297176 NCBI fileEvidenceIEA
GeneMap3k11Authority309168Mapping file id309168 NCBI fileEvidenceIEA
GeneMapk1Authority116590Mapping file id116590 NCBI fileEvidenceIEA
GeneMapk11Authority689314Mapping file idENSRNOG00000006984 Ensembl fileEvidenceIEA
GeneMapk3Authority50689Mapping file id50689 NCBI fileEvidenceIEA
GeneMapre1Authority114764Mapping file id114764 NCBI fileEvidenceIEA
GeneMcamAuthority78967Mapping file id78967 NCBI fileEvidenceIEA
GeneMcf2Authority317598Mapping file id317598 NCBI fileEvidenceIEA
GeneMcf2lAuthority117020Mapping file id117020 NCBI fileEvidenceIEA
GeneMen1Authority29417Mapping file id29417 NCBI fileEvidenceIEA
GeneMfn1Authority192647Mapping file id192647 NCBI fileEvidenceIEA
GeneMfn2Authority64476Mapping file idENSRNOG00000046424 Ensembl fileEvidenceIEA
GeneMis12Authority501706Mapping file idENSRNOG00000066036 Ensembl fileEvidenceIEA
GeneMpp7Authority307035Mapping file id307035 NCBI fileEvidenceIEA
GeneMrtfaAuthority315151Mapping file idENSRNOG00000018803 Ensembl fileEvidenceIEA
GeneMsi2Authority360596Mapping file id360596 NCBI fileEvidenceIEA
GeneMtmr1Authority317296Mapping file id317296 NCBI fileEvidenceIEA
GeneMtrAuthority81522Mapping file id81522 NCBI fileEvidenceIEA
GeneMtx1Authority295241Mapping file idENSRNOG00000042977 Ensembl fileEvidenceIEA
GeneMuc13Authority207126Mapping file idENSRNOG00000001794 Ensembl fileEvidenceIEA
GeneMylkAuthority288057Mapping file id288057 NCBI fileEvidenceIEA
GeneMyo19Authority497974Mapping file id497974 NCBI fileEvidenceIEA
GeneMyo6Authority315840Mapping file id315840 NCBI fileEvidenceIEA
GeneMyo9aAuthority171296Mapping file id171296 NCBI fileEvidenceIEA
GeneMyo9bAuthority25486Mapping file idENSRNOG00000016256 Ensembl fileEvidenceIEA
GeneNcf1Authority114553Mapping file idENSRNOG00000001480 Ensembl fileEvidenceIEA
GeneNcf2Authority364018Mapping file idENSRNOG00000028016 Ensembl fileEvidenceIEA
GeneNcf4Authority500904Mapping file idENSRNOG00000006940 Ensembl fileEvidenceIEA
GeneNck1Authority300955Mapping file id300955 NCBI fileEvidenceIEA
GeneNck2Authority316369Mapping file id316369 NCBI fileEvidenceIEA
GeneNckap1Authority58823Mapping file id58823 NCBI fileEvidenceIEA
GeneNckap1lAuthority315348Mapping file id315348 NCBI fileEvidenceIEA
GeneNckipsdAuthority301009Mapping file idENSRNOG00000031816 Ensembl fileEvidenceIEA
GeneNcoa2Authority83724Mapping file id83724 NCBI fileEvidenceIEA
GeneNdc80Authority301701Mapping file idENSRNOG00000013727 Ensembl fileEvidenceIEA
GeneNde1Authority83836Mapping file id83836 NCBI fileEvidenceIEA
GeneNdel1Authority170845Mapping file id170845 NCBI fileEvidenceIEA
GeneNdufa5Authority25488Mapping file id25488 NCBI fileEvidenceIEA
GeneNdufs3Authority295923Mapping file idENSRNOG00000009155 Ensembl fileEvidenceIEA
GeneNet1Authority307098Mapping file id307098 NCBI fileEvidenceIEA
GeneNgefAuthority246217Mapping file idENSRNOG00000016653 Ensembl fileEvidenceIEA
GeneNhsAuthority317494Mapping file idENSRNOG00000030759 Ensembl fileEvidenceIEA
GeneNipsnap2Authority498174Mapping file id498174 NCBI fileEvidenceIEA
GeneNischAuthority306255Mapping file idENSRNOG00000018823 Ensembl fileEvidenceIEA
GeneNox1Authority114243Mapping file id114243 NCBI fileEvidenceIEA
GeneNox3Authority292279Mapping file id292279 NCBI fileEvidenceIEA
GeneNoxa1Authority311793Mapping file id311793 NCBI fileEvidenceIEA
GeneNoxo1Authority302976Mapping file id302976 NCBI fileEvidenceIEA
GeneNsfl1cAuthority83809Mapping file id83809 NCBI fileEvidenceIEA
GeneNudcAuthority29648Mapping file id29648 NCBI fileEvidenceIEA
GeneNuf2Authority304951Mapping file id304951 NCBI fileEvidenceIEA
GeneNup107Authority116555Mapping file idENSRNOG00000006541 Ensembl fileEvidenceIEA
GeneNup133Authority292085Mapping file id292085 NCBI fileEvidenceIEA
GeneNup160Authority311182Mapping file idENSRNOG00000028215 Ensembl fileEvidenceIEA
GeneNup37Authority299706Mapping file idENSRNOG00000004727 Ensembl fileEvidenceIEA
GeneNup43Authority683983Mapping file id683983 NCBI fileEvidenceIEA
GeneNup85Authority287830Mapping file id287830 NCBI fileEvidenceIEA
GeneNup98Authority81738Mapping file id81738 NCBI fileEvidenceIEA
GeneObscnAuthority338458Mapping file idENSRNOG00000058068 Ensembl fileEvidenceIEA
GeneOcrlAuthority317576Mapping file idENSRNOG00000003875 Ensembl fileEvidenceIEA
GeneOphn1Authority312108Mapping file id312108 NCBI fileEvidenceIEA
GeneOsbpl11Authority303888Mapping file id303888 NCBI fileEvidenceIEA
GenePafah1b1Authority83572Mapping file id83572 NCBI fileEvidenceIEA
GenePak1Authority29431Mapping file id29431 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.