Pathway Rat Rattus norvegicus
Read this first
Signaling by Rho GTPases, Miro GTPases and RHOBTB3
R-RNO-9716542 in Reactome release 97: under Signal Transduction, with 629 genes placed in it by the mapping files and 3 child pathways in the hierarchy.
The same number in the other species
Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9716542 (human), R-MMU-9716542 (mouse). Whether the event was inferred from this one is what the record says.
01The record
Reactome's own record of this pathway
What this tells you
The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.
Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions.
[R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.
Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists.
[R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments.
[R11]
On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available.
[R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required.
[R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.
A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].
- [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
- [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
- [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
- [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
- [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
- [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
02The genes
Genes Reactome places in this rat pathway
The mapping files place 629 genes in this rat pathway; showing 401 to 500, in pages of 100, sorted by symbol for reading. The order carries no ranking.
| Gene | Authority id | Mapping file id | Evidence codes |
|---|---|---|---|
| GenePak2 | Authority29432 | Mapping file id29432 NCBI file | EvidenceIEA |
| GenePak3 | Authority29433 | Mapping file id29433 NCBI file | EvidenceIEA |
| GenePak4 | Authority292756 | Mapping file id292756 NCBI file | EvidenceIEA |
| GenePak5 | Authority311450 | Mapping file id311450 NCBI file | EvidenceIEA |
| GenePak6 | Authority296078 | Mapping file idENSRNOG00000007925 Ensembl file | EvidenceIEA |
| GenePard6a | Authority307799 | Mapping file idENSRNOG00000017746 Ensembl file | EvidenceIEA |
| GenePard6b | Authority362279 | Mapping file id362279 NCBI file | EvidenceIEA |
| GenePcdh7 | Authority360942 | Mapping file id360942 NCBI file | EvidenceIEA |
| GenePde5a | Authority171115 | Mapping file id171115 NCBI file | EvidenceIEA |
| GenePdpk1 | Authority81745 | Mapping file id81745 NCBI file | EvidenceIEA |
| GenePeak1 | Authority315686 | Mapping file id315686 NCBI file | EvidenceIEA |
| GenePfn1 | Authority64303 | Mapping file id64303 NCBI file | EvidenceIEA |
| GenePfn2 | Authority81531 | Mapping file id81531 NCBI file | EvidenceIEA |
| GenePgrmc2 | Authority361940 | Mapping file id361940 NCBI file | EvidenceIEA |
| GenePhip | Authority315843 | Mapping file idENSRNOG00000008652 Ensembl file | EvidenceIEA |
| GenePicalm | Authority89816 | Mapping file id89816 NCBI file | EvidenceIEA |
| GenePik3c3 | Authority65052 | Mapping file id65052 NCBI file | EvidenceIEA |
| GenePik3ca | Authority170911 | Mapping file id170911 NCBI file | EvidenceIEA |
| GenePik3r1 | Authority25513 | Mapping file id25513 NCBI file | EvidenceIEA |
| GenePik3r3 | Authority60664 | Mapping file id60664 NCBI file | EvidenceIEA |
| GenePik3r4 | Authority363131 | Mapping file id363131 NCBI file | EvidenceIEA |
| GenePin1 | Authority298696 | Mapping file idENSRNOG00000085482 Ensembl file | EvidenceIEA |
| GenePkn1 | Authority29355 | Mapping file id29355 NCBI file | EvidenceIEA |
| GenePkn2 | Authority207122 | Mapping file idENSRNOG00000011317 Ensembl file | EvidenceIEA |
| GenePkp4 | Authority295625 | Mapping file idENSRNOG00000005504 Ensembl file | EvidenceIEA |
| GenePld1 | Authority25096 | Mapping file id25096 NCBI file | EvidenceIEA |
| GenePld2 | Authority25097 | Mapping file id25097 NCBI file | EvidenceIEA |
| GenePlekhg1 | Authority679812 | Mapping file idENSRNOG00000016011 Ensembl file | EvidenceIEA |
| GenePlekhg2 | Authority292750 | Mapping file idENSRNOG00000030266 Ensembl file | EvidenceIEA |
| GenePlekhg3 | Authority314249 | Mapping file id314249 NCBI file | EvidenceIEA |
| GenePlekhg5 | Authority310999 | Mapping file id310999 NCBI file | EvidenceIEA |
| GenePlekhg6 | Authority100362241 | Mapping file idENSRNOG00000019528 Ensembl file | EvidenceIEA |
| GenePlk1 | Authority25515 | Mapping file id25515 NCBI file | EvidenceIEA |
| GenePlxna1 | Authority362398 | Mapping file idENSRNOG00000017003 Ensembl file | EvidenceIEA |
| GenePlxnd1 | Authority312652 | Mapping file idENSRNOG00000025209 Ensembl file | EvidenceIEA |
| GenePmf1 | Authority681050 | Mapping file id681050 NCBI file | EvidenceIEA |
| GenePpp1cb | Authority25594 | Mapping file id25594 NCBI file | EvidenceIEA |
| GenePpp1cc | Authority24669 | Mapping file id24669 NCBI file | EvidenceIEA |
| GenePpp1r12a | Authority116670 | Mapping file id116670 NCBI file | EvidenceIEA |
| GenePpp1r12b | Authority304813 | Mapping file id304813 NCBI file | EvidenceIEA |
| GenePpp1r14a | Authority114004 | Mapping file id114004 NCBI file | EvidenceIEA |
| GenePpp2ca | Authority24672 | Mapping file id24672 NCBI file | EvidenceIEA |
| GenePpp2cb | Authority24673 | Mapping file id24673 NCBI file | EvidenceIEA |
| GenePpp2r1a | Authority117281 | Mapping file id117281 NCBI file | EvidenceIEA |
| GenePpp2r1b | Authority315648 | Mapping file id315648 NCBI file | EvidenceIEA |
| GenePpp2r5a | Authority312754 | Mapping file id312754 NCBI file | EvidenceIEA |
| GenePpp2r5b | Authority309179 | Mapping file id309179 NCBI file | EvidenceIEA |
| GenePpp2r5c | Authority691318 | Mapping file idENSRNOG00000004973 Ensembl file | EvidenceIEA |
| GenePpp2r5d | Authority363193 | Mapping file id363193 NCBI file | EvidenceIEA |
| GenePpp2r5e | Authority299147 | Mapping file id299147 NCBI file | EvidenceIEA |
| GenePrag1 | Authority306506 | Mapping file id306506 NCBI file | EvidenceIEA |
| GenePrc1 | Authority308761 | Mapping file id308761 NCBI file | EvidenceIEA |
| GenePrex1 | Authority311647 | Mapping file id311647 NCBI file | EvidenceIEA |
| GenePrex2 | Authority312912 | Mapping file idENSRNOG00000005391 Ensembl file | EvidenceIEA |
| GenePrkca | Authority24680 | Mapping file id24680 NCBI file | EvidenceIEA |
| GenePrkcb | Authority25023 | Mapping file id25023 NCBI file | EvidenceIEA |
| GenePrkcd | Authority170538 | Mapping file id170538 NCBI file | EvidenceIEA |
| GenePrkcz | Authority25522 | Mapping file id25522 NCBI file | EvidenceIEA |
| GenePtk2 | Authority25614 | Mapping file id25614 NCBI file | EvidenceIEA |
| GenePtk2b | Authority50646 | Mapping file id50646 NCBI file | EvidenceIEA |
| GenePtpn13 | Authority498331 | Mapping file id498331 NCBI file | EvidenceIEA |
| GeneRab7a | Authority29448 | Mapping file id29448 NCBI file | EvidenceIEA |
| GeneRab9a | Authority84589 | Mapping file id84589 NCBI file | EvidenceIEA |
| GeneRab9b | Authority367915 | Mapping file id367915 NCBI file | EvidenceIEA |
| GeneRac1 | Authority363875 | Mapping file id363875 NCBI file | EvidenceIEA |
| GeneRac2 | Authority366957 | Mapping file idENSRNOG00000007350 Ensembl file | EvidenceIEA |
| GeneRac3 | Authority688319 | Mapping file id688319 NCBI file | EvidenceIEA |
| GeneRacgap1 | Authority315298 | Mapping file idENSRNOG00000049033 Ensembl file | EvidenceIEA |
| GeneRalbp1 | Authority84014 | Mapping file id84014 NCBI file | EvidenceIEA |
| GeneRalgapa1 | Authority56785 | Mapping file id56785 NCBI file | EvidenceIEA |
| GeneRanbp2 | Authority294429 | Mapping file id294429 NCBI file | EvidenceIEA |
| GeneRangap1 | Authority362965 | Mapping file idENSRNOG00000031789 Ensembl file | EvidenceIEA |
| GeneRapgef1 | Authority63881 | Mapping file idENSRNOG00000014316 Ensembl file | EvidenceIEA |
| GeneRasal2 | Authority304893 | Mapping file id304893 NCBI file | EvidenceIEA |
| GeneRasgrf2 | Authority114513 | Mapping file id114513 NCBI file | EvidenceIEA |
| GeneRbbp6 | Authority308968 | Mapping file id308968 NCBI file | EvidenceIEA |
| GeneRbmx | Authority302855 | Mapping file id302855 NCBI file | EvidenceIEA |
| GeneRcc2 | Authority298594 | Mapping file id298594 NCBI file | EvidenceIEA |
| GeneRhoa | Authority117273 | Mapping file id117273 NCBI file | EvidenceIEA |
| GeneRhob | Authority64373 | Mapping file id64373 NCBI file | EvidenceIEA |
| GeneRhobtb1 | Authority309722 | Mapping file id309722 NCBI file | EvidenceIEA |
| GeneRhobtb2 | Authority306004 | Mapping file id306004 NCBI file | EvidenceIEA |
| GeneRhobtb3 | Authority309922 | Mapping file id309922 NCBI file | EvidenceIEA |
| GeneRhof | Authority690130 | Mapping file id690130 NCBI file | EvidenceIEA |
| GeneRhog | Authority308875 | Mapping file id308875 NCBI file | EvidenceIEA |
| GeneRhoh | Authority305341 | Mapping file id305341 NCBI file | EvidenceIEA |
| GeneRhoj | Authority299145 | Mapping file id299145 NCBI file | EvidenceIEA |
| GeneRhoq | Authority85428 | Mapping file id85428 NCBI file | EvidenceIEA |
| GeneRhot2 | Authority287156 | Mapping file id287156 NCBI file | EvidenceIEA |
| GeneRhou | Authority678766 | Mapping file id678766 NCBI file | EvidenceIEA |
| GeneRhov | Authority171581 | Mapping file id171581 NCBI file | EvidenceIEA |
| GeneRhpn1 | Authority300030 | Mapping file id300030 NCBI file | EvidenceIEA |
| GeneRhpn2 | Authority308516 | Mapping file idENSRNOG00000011885 Ensembl file | EvidenceIEA |
| GeneRnd1 | Authority362993 | Mapping file id362993 NCBI file | EvidenceIEA |
| GeneRnd2 | Authority303553 | Mapping file id303553 NCBI file | EvidenceIEA |
| GeneRnd3 | Authority295588 | Mapping file id295588 NCBI file | EvidenceIEA |
| GeneRnf20 | Authority313216 | Mapping file id313216 NCBI file | EvidenceIEA |
| GeneRock1 | Authority81762 | Mapping file idENSRNOG00000031092 Ensembl file | EvidenceIEA |
| GeneRock2 | Authority25537 | Mapping file id25537 NCBI file | EvidenceIEA |
| GeneRps27 | Authority94266 | Mapping file id94266 NCBI file | EvidenceIEA |
Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.
- Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.
03The hierarchy
Parents and children in this release's hierarchy
Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.
- Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.