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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

SLC-mediated transport of organic anions

R-RNO-9955298 in Reactome release 97: under SLC-mediated transmembrane transport, with 36 genes placed in it by the mapping files and 5 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-9955298 (human), R-MMU-9955298 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 36 genes in this rat pathway; showing 1 to 36, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 1 of 1
GeneAvpAuthority24221Mapping file id24221 NCBI fileEvidenceIEA
GeneBsgAuthority25246Mapping file id25246 NCBI fileEvidenceIEA
GeneEmbAuthority114511Mapping file id114511 NCBI fileEvidenceIEA
GeneSlc10a6Authority289459Mapping file id289459 NCBI fileEvidenceIEA
GeneSlc13a2Authority65202Mapping file id65202 NCBI fileEvidenceIEA
GeneSlc13a3Authority64846Mapping file idENSRNOG00000019118 Ensembl fileEvidenceIEA
GeneSlc13a5Authority266998Mapping file id266998 NCBI fileEvidenceIEA
GeneSlc16a1Authority25027Mapping file id25027 NCBI fileEvidenceIEA
GeneSlc16a2Authority259248Mapping file id259248 NCBI fileEvidenceIEA
GeneSlc16a3Authority80878Mapping file id80878 NCBI fileEvidenceIEA
GeneSlc16a7Authority29735Mapping file id29735 NCBI fileEvidenceIEA
GeneSlc16a8Authority65200Mapping file id65200 NCBI fileEvidenceIEA
GeneSlc17a5Authority363103Mapping file id363103 NCBI fileEvidenceIEA
GeneSlc22a12Authority365398Mapping file id365398 NCBI fileEvidenceIEA
GeneSlc22a6Authority29509Mapping file id29509 NCBI fileEvidenceIEA
GeneSlc22a7Authority89776Mapping file id89776 NCBI fileEvidenceIEA
GeneSlc22a8Authority83500Mapping file id83500 NCBI fileEvidenceIEA
GeneSlc25a1Authority29743Mapping file id29743 NCBI fileEvidenceIEA
GeneSlc25a10Authority170943Mapping file id170943 NCBI fileEvidenceIEA
GeneSlc25a11Authority64201Mapping file id64201 NCBI fileEvidenceIEA
GeneSlc44a1Authority85254Mapping file id85254 NCBI fileEvidenceIEA
GeneSlc44a2Authority363024Mapping file id363024 NCBI fileEvidenceIEA
GeneSlc44a3Authority295417Mapping file id295417 NCBI fileEvidenceIEA
GeneSlc44a4Authority294255Mapping file id294255 NCBI fileEvidenceIEA
GeneSlc44a5Authority365962Mapping file idENSRNOG00000042332 Ensembl fileEvidenceIEA
GeneSlc5a12Authority362188Mapping file id362188 NCBI fileEvidenceIEA
GeneSlc5a7Authority85426Mapping file id85426 NCBI fileEvidenceIEA
GeneSlc5a8Authority500820Mapping file idENSRNOG00000006367 Ensembl fileEvidenceIEA
GeneSlco1a4Authority170698Mapping file id170698 NCBI fileEvidenceIEA
GeneSlco1b2Authority58978Mapping file id58978 NCBI fileEvidenceIEA
GeneSlco1c1Authority84511Mapping file id84511 NCBI fileEvidenceIEA
GeneSlco2a1Authority24546Mapping file idENSRNOG00000009005 Ensembl fileEvidenceIEA
GeneSlco2b1Authority140860Mapping file id140860 NCBI fileEvidenceIEA
GeneSlco3a1Authority140915Mapping file id140915 NCBI fileEvidenceIEA
GeneSlco4a1Authority171144Mapping file idENSRNOG00000053430 Ensembl fileEvidenceIEA
GeneSlco4c1Authority432363Mapping file id432363 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.