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Pathway Human Homo sapiens

Class I MHC mediated antigen processing & presentation

R-HSA-983169 in Reactome release 97: under Adaptive Immune System, with 376 genes placed in it by the mapping files and 4 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-MMU-983169 (mouse), R-RNO-983169 (rat). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  5. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this human pathway

The mapping files place 376 genes in this human pathway; showing 301 to 376, in pages of 100, sorted by symbol for reading. The order carries no ranking. 2 of the rows shown carry an id the identity file does not name, kept as the source wrote it.

Genes Reactome places in this human pathway, page 4 of 4
GeneTRAIPAuthorityHGNC:30764Mapping file id10293 NCBI fileEvidenceTAS
GeneTRIM11AuthorityHGNC:16281Mapping file id81559 NCBI fileEvidenceTAS
GeneTRIM21AuthorityHGNC:11312Mapping file id6737 NCBI fileEvidenceTAS
GeneTRIM32AuthorityHGNC:16380Mapping file id22954 NCBI fileEvidenceTAS
GeneTRIM36AuthorityHGNC:16280Mapping file id55521 NCBI fileEvidenceTAS
GeneTRIM37AuthorityHGNC:7523Mapping file id4591 NCBI fileEvidenceTAS
GeneTRIM39AuthorityHGNC:10065Mapping file id56658 NCBI fileEvidenceTAS
GeneTRIM4AuthorityHGNC:16275Mapping file id89122 NCBI fileEvidenceTAS
GeneTRIM41AuthorityHGNC:19013Mapping file id90933 NCBI fileEvidenceTAS
GeneTRIM50AuthorityHGNC:19017Mapping file id135892 NCBI fileEvidenceTAS
GeneTRIM63AuthorityHGNC:16007Mapping file id84676 NCBI fileEvidenceTAS
GeneTRIM69AuthorityHGNC:17857Mapping file id140691 NCBI fileEvidenceTAS
GeneTRIM71AuthorityHGNC:32669Mapping file id131405 NCBI fileEvidenceTAS
GeneTRIM9AuthorityHGNC:16288Mapping file id114088 NCBI fileEvidenceTAS
GeneTRIP12AuthorityHGNC:12306Mapping file id9320 NCBI fileEvidenceTAS
GeneUBA1AuthorityHGNC:12469Mapping file id7317 NCBI fileEvidenceTAS
GeneUBA3AuthorityHGNC:12470Mapping file id9039 NCBI fileEvidenceTAS
GeneUBA5AuthorityHGNC:23230Mapping file id79876 NCBI fileEvidenceTAS
GeneUBA52AuthorityHGNC:12458Mapping file id7311 NCBI fileEvidenceIEA, TAS
GeneUBA6AuthorityHGNC:25581Mapping file id55236 NCBI fileEvidenceTAS
GeneUBA7AuthorityHGNC:12471Mapping file id7318 NCBI fileEvidenceTAS
GeneUBAC1AuthorityHGNC:30221Mapping file id10422 NCBI fileEvidenceTAS
GeneUBBAuthorityHGNC:12463Mapping file id7314 NCBI fileEvidenceIEA, TAS
GeneUBCAuthorityHGNC:12468Mapping file id7316 NCBI fileEvidenceIEA, TAS
GeneUBE2AAuthorityHGNC:12472Mapping file id7319 NCBI fileEvidenceTAS
GeneUBE2BAuthorityHGNC:12473Mapping file id7320 NCBI fileEvidenceTAS
GeneUBE2CAuthorityHGNC:15937Mapping file id11065 NCBI fileEvidenceTAS
GeneUBE2D1AuthorityHGNC:12474Mapping file id7321 NCBI fileEvidenceTAS
GeneUBE2D2AuthorityHGNC:12475Mapping file id7322 NCBI fileEvidenceTAS
GeneUBE2D3AuthorityHGNC:12476Mapping file id7323 NCBI fileEvidenceTAS
GeneUBE2D4AuthorityHGNC:21647Mapping file id51619 NCBI fileEvidenceTAS
GeneUBE2E1AuthorityHGNC:12477Mapping file id7324 NCBI fileEvidenceTAS
GeneUBE2E2AuthorityHGNC:12478Mapping file id7325 NCBI fileEvidenceTAS
GeneUBE2E3AuthorityHGNC:12479Mapping file id10477 NCBI fileEvidenceTAS
GeneUBE2FAuthorityHGNC:12480Mapping file id140739 NCBI fileEvidenceTAS
GeneUBE2G1AuthorityHGNC:12482Mapping file id7326 NCBI fileEvidenceTAS
GeneUBE2G2AuthorityHGNC:12483Mapping file id7327 NCBI fileEvidenceTAS
GeneUBE2HAuthorityHGNC:12484Mapping file id7328 NCBI fileEvidenceTAS
GeneUBE2J1AuthorityHGNC:17598Mapping file id51465 NCBI fileEvidenceTAS
GeneUBE2J2AuthorityHGNC:19268Mapping file id118424 NCBI fileEvidenceTAS
GeneUBE2KAuthorityHGNC:4914Mapping file id3093 NCBI fileEvidenceTAS
GeneUBE2L3AuthorityHGNC:12488Mapping file id7332 NCBI fileEvidenceTAS
GeneUBE2L6AuthorityHGNC:12490Mapping file id9246 NCBI fileEvidenceTAS
GeneUBE2MAuthorityHGNC:12491Mapping file id9040 NCBI fileEvidenceTAS
GeneUBE2NAuthorityHGNC:12492Mapping file id7334 NCBI fileEvidenceTAS
GeneUBE2OAuthorityHGNC:29554Mapping file id63893 NCBI fileEvidenceTAS
GeneUBE2Q1AuthorityHGNC:15698Mapping file id55585 NCBI fileEvidenceTAS
GeneUBE2Q2AuthorityHGNC:19248Mapping file id92912 NCBI fileEvidenceTAS
GeneUBE2R2AuthorityHGNC:19907Mapping file id54926 NCBI fileEvidenceTAS
GeneUBE2SAuthorityHGNC:17895Mapping file id27338 NCBI fileEvidenceTAS
GeneUBE2UAuthorityHGNC:28559Mapping file id148581 NCBI fileEvidenceTAS
GeneUBE2V1AuthorityHGNC:12494Mapping file id7335 NCBI fileEvidenceTAS
GeneUBE2V2AuthorityHGNC:12495Mapping file id7336 NCBI fileEvidenceTAS
GeneUBE2WAuthorityHGNC:25616Mapping file id55284 NCBI fileEvidenceTAS
GeneUBE2ZAuthorityHGNC:25847Mapping file id65264 NCBI fileEvidenceTAS
GeneUBE3AAuthorityHGNC:12496Mapping file id7337 NCBI fileEvidenceTAS
GeneUBE3BAuthorityHGNC:13478Mapping file id89910 NCBI fileEvidenceTAS
GeneUBE3CAuthorityHGNC:16803Mapping file id9690 NCBI fileEvidenceTAS
GeneUBE3DAuthorityHGNC:21381Mapping file id90025 NCBI fileEvidenceTAS
GeneUBE4AAuthorityHGNC:12499Mapping file id9354 NCBI fileEvidenceTAS
GeneUBOX5AuthorityHGNC:17777Mapping file id22888 NCBI fileEvidenceTAS
GeneUBR1AuthorityHGNC:16808Mapping file id197131 NCBI fileEvidenceTAS
GeneUBR2AuthorityHGNC:21289Mapping file id23304 NCBI fileEvidenceTAS
GeneUBR4AuthorityHGNC:30313Mapping file id23352 NCBI fileEvidenceTAS
GeneUFL1AuthorityHGNC:23039Mapping file id23376 NCBI fileEvidenceTAS
GeneUNKLAuthorityHGNC:14184Mapping file id64718 NCBI fileEvidenceTAS
GeneVAMP3AuthorityHGNC:12644Mapping file id9341 NCBI fileEvidenceTAS
GeneVAMP8AuthorityHGNC:12647Mapping file id8673 NCBI fileEvidenceTAS
GeneVHLAuthorityHGNC:12687Mapping file id7428 NCBI fileEvidenceTAS
GeneWSB1AuthorityHGNC:19221Mapping file id26118 NCBI fileEvidenceTAS
GeneWWP1AuthorityHGNC:17004Mapping file id11059 NCBI fileEvidenceTAS
GeneZBTB16AuthorityHGNC:12930Mapping file id7704 NCBI fileEvidenceTAS
GeneZNRF1AuthorityHGNC:18452Mapping file id84937 NCBI fileEvidenceTAS
GeneZNRF2AuthorityHGNC:22316Mapping file id223082 NCBI fileEvidenceTAS
Geneno symbol in the identity fileAuthoritynoneMapping file id43740577 NCBI fileEvidenceTAS
Geneno symbol in the identity fileAuthoritynoneMapping file id884327 NCBI fileEvidenceTAS

Evidence codes on this page: IEA, TAS, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: of the 138,908 human pathway-gene pairs both files place, 207 (0.149 per cent, over 47 genes) carry TAS in the Ensembl file where the NCBI rows carry IEA alone.

  • Reactome mapping files, the human rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the human pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.