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Pathway Rat Rattus norvegicus

Read this first

Every rat pathway in Reactome is electronically inferred from the curated human one; Reactome's own sentence about that stands beside the record below.

PIP3 activates AKT signaling

R-RNO-1257604 in Reactome release 97: under Intracellular signaling by second messengers, with 230 genes placed in it by the mapping files and 4 child pathways in the hierarchy.

The same number in the other species

Reactome writes the mouse and rat events it infers from a human pathway under the human number with the species token. A door opens only where that species' own list in this release holds the id: R-HSA-1257604 (human), R-MMU-1257604 (mouse). Whether the event was inferred from this one is what the record says.

01The record

Reactome's own record of this pathway

What this tells you

The pathway list, the hierarchy and the genes on this page are read from the files Reactome publishes for Reactome release 97, built into this site on 2026-09-09: the pathway list, the hierarchy relationship file and the two gene mapping files. The record card is the one live read, Reactome's own record of this pathway.

Reactome's download page describes the mapping files: Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. [R13] The gene list here is the all-levels mapping of NCBI Gene ids, filled from the all-levels mapping of Ensembl ids where the NCBI file has no row for a gene; each row names which file it came from by the shape of its source id. Each row carries the evidence codes the file writes for it, as written and unranked, and both where the file writes both; no page of Reactome's documentation the survey read defines the codes, so this page does not expand them. A gene id the identity files do not name is kept as the source's own id with no door rather than turned into a symbol.

Every rat pathway in Reactome is inferred from the curated human one: We use the set of manually curated human reactions to electronically infer reactions in fourteen evolutionarily divergent eukaryotic species for which high-quality whole-genome sequence data are available, and hence a comprehensive and high-quality set of protein predictions exists. [R11] Reactome's own sentence about what that produces is printed beside the record: The electronically inferred reactions presented in Reactome are thus not data, but hypotheses useful to direct the design of confirmatory experiments. [R11]

On citing what a search finds, Reactome says: It should be remembered that while we strive to contain the most current and accurate data, Reactome should not be used in citations where other primary sources of information are available. [R12] The record card prints the literature Reactome attaches to a curated pathway for that reason. The data are public domain: All data in the Reactome database and files derived from that data are licensed under the Creative Commons Public Domain Dedication (CC0). User may copy, modify, and distribute these data, even for commercial purposes, without asking for permission. Attribution is encouraged but not required. [R10] The pathway illustrations are licensed apart, under CC BY 4.0, and none is shown here.

A gene on this list is one Reactome places in this pathway in this release, and that is all the row says: it does not say the gene is expressed in a tissue or associated with a disease, which are the other two explorers' questions, read from other sources. Reactome's papers of record are [R01] [R02].

  1. [R01] Ragueneau E, Gong C, Sinquin P, Sevilla C, Beavers D, Grentner A, et al. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Research 54:D673-D681. PMID 41251150, doi 10.1093/nar/gkaf1223.
  2. [R02] Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, et al. (2024). The Reactome Pathway Knowledgebase 2024. Nucleic Acids Research 52:D672-D678. PMID 37941124, doi 10.1093/nar/gkad1025.
  3. [R10] Reactome, reactome.org. License Agreement. https://reactome.org/license, read 2026-09-09.
  4. [R11] Reactome, reactome.org. Computationally inferred events. https://reactome.org/documentation/inferred-events, read 2026-09-09.
  5. [R12] Reactome, reactome.org. Citing us. https://reactome.org/cite, read 2026-09-09.
  6. [R13] Reactome, reactome.org. Download. https://reactome.org/download-data, read 2026-09-09.
Reading this pathway's record from Reactome (the pathway record).Still reading. A first read of a pathway can take a while; this page waits up to 35 seconds for it, and its scripts then bring in the panel, or a line saying what did not arrive.

02The genes

Genes Reactome places in this rat pathway

The mapping files place 230 genes in this rat pathway; showing 101 to 200, in pages of 100, sorted by symbol for reading. The order carries no ranking.

Genes Reactome places in this rat pathway, page 2 of 3
GeneMapkap1Authority296648Mapping file id296648 NCBI fileEvidenceIEA
GeneMbd3Authority362834Mapping file id362834 NCBI fileEvidenceIEA
GeneMdm2Authority314856Mapping file idENSRNOG00000006304 Ensembl fileEvidenceIEA
GeneMecomAuthority294924Mapping file id294924 NCBI fileEvidenceIEA
GeneMetAuthority24553Mapping file id24553 NCBI fileEvidenceIEA
GeneMkrn1Authority296988Mapping file id296988 NCBI fileEvidenceIEA
GeneMlst8Authority64226Mapping file id64226 NCBI fileEvidenceIEA
GeneMta1Authority64520Mapping file id64520 NCBI fileEvidenceIEA
GeneMta2Authority361724Mapping file id361724 NCBI fileEvidenceIEA
GeneMta3Authority100362346Mapping file id100362346 NCBI fileEvidenceIEA
GeneMtorAuthority56718Mapping file id56718 NCBI fileEvidenceIEA
GeneMyd88Authority301059Mapping file id301059 NCBI fileEvidenceIEA
GeneNedd4Authority25489Mapping file id25489 NCBI fileEvidenceIEA
GeneNr4a1Authority79240Mapping file id79240 NCBI fileEvidenceIEA
GeneNrg2Authority432361Mapping file id432361 NCBI fileEvidenceIEA
GeneNrg3Authority498596Mapping file id498596 NCBI fileEvidenceIEA
GeneNtf3Authority81737Mapping file id81737 NCBI fileEvidenceIEA
GeneNtf4Authority25730Mapping file id25730 NCBI fileEvidenceIEA
GeneNtrk2Authority25054Mapping file id25054 NCBI fileEvidenceIEA
GeneNtrk3Authority29613Mapping file id29613 NCBI fileEvidenceIEA
GeneOtud3Authority500572Mapping file id500572 NCBI fileEvidenceIEA
GenePdgfaAuthority25266Mapping file id25266 NCBI fileEvidenceIEA
GenePdgfbAuthority24628Mapping file id24628 NCBI fileEvidenceIEA
GenePdgfraAuthority25267Mapping file id25267 NCBI fileEvidenceIEA
GenePdgfrbAuthority24629Mapping file id24629 NCBI fileEvidenceIEA
GenePdpk1Authority81745Mapping file id81745 NCBI fileEvidenceIEA
GenePhc1Authority312690Mapping file idENSRNOG00000015191 Ensembl fileEvidenceIEA
GenePhc2Authority313038Mapping file id313038 NCBI fileEvidenceIEA
GenePhc3Authority310258Mapping file id310258 NCBI fileEvidenceIEA
GenePhlpp1Authority59265Mapping file id59265 NCBI fileEvidenceIEA
GenePik3ap1Authority294048Mapping file id294048 NCBI fileEvidenceIEA
GenePik3caAuthority170911Mapping file id170911 NCBI fileEvidenceIEA
GenePik3cbAuthority85243Mapping file id85243 NCBI fileEvidenceIEA
GenePik3cdAuthority366508Mapping file id366508 NCBI fileEvidenceIEA
GenePik3cgAuthority298947Mapping file id298947 NCBI fileEvidenceIEA
GenePik3r1Authority25513Mapping file id25513 NCBI fileEvidenceIEA
GenePik3r3Authority60664Mapping file id60664 NCBI fileEvidenceIEA
GenePik3r5Authority497931Mapping file id497931 NCBI fileEvidenceIEA
GenePik3r6Authority497932Mapping file id497932 NCBI fileEvidenceIEA
GenePip4k2aAuthority116723Mapping file id116723 NCBI fileEvidenceIEA
GenePip4k2bAuthority89812Mapping file id89812 NCBI fileEvidenceIEA
GenePip4k2cAuthority140607Mapping file id140607 NCBI fileEvidenceIEA
GenePip5k1aAuthority365865Mapping file id365865 NCBI fileEvidenceIEA
GenePip5k1bAuthority309419Mapping file id309419 NCBI fileEvidenceIEA
GenePip5k1cAuthority314641Mapping file id314641 NCBI fileEvidenceIEA
GenePmlAuthority315713Mapping file idENSRNOG00000008400 Ensembl fileEvidenceIEA
GenePpp2caAuthority24672Mapping file id24672 NCBI fileEvidenceIEA
GenePpp2cbAuthority24673Mapping file id24673 NCBI fileEvidenceIEA
GenePpp2r1aAuthority117281Mapping file id117281 NCBI fileEvidenceIEA
GenePpp2r1bAuthority315648Mapping file id315648 NCBI fileEvidenceIEA
GenePpp2r5aAuthority312754Mapping file id312754 NCBI fileEvidenceIEA
GenePpp2r5bAuthority309179Mapping file id309179 NCBI fileEvidenceIEA
GenePpp2r5cAuthority691318Mapping file idENSRNOG00000004973 Ensembl fileEvidenceIEA
GenePpp2r5dAuthority363193Mapping file id363193 NCBI fileEvidenceIEA
GenePpp2r5eAuthority299147Mapping file id299147 NCBI fileEvidenceIEA
GenePrex2Authority312912Mapping file idENSRNOG00000005391 Ensembl fileEvidenceIEA
GenePrr5Authority315189Mapping file id315189 NCBI fileEvidenceIEA
GenePsma1Authority29668Mapping file id29668 NCBI fileEvidenceIEA
GenePsma2Authority29669Mapping file id29669 NCBI fileEvidenceIEA
GenePsma3Authority29670Mapping file id29670 NCBI fileEvidenceIEA
GenePsma4Authority29671Mapping file id29671 NCBI fileEvidenceIEA
GenePsma5Authority29672Mapping file idENSRNOG00000019868 Ensembl fileEvidenceIEA
GenePsma6Authority29673Mapping file id29673 NCBI fileEvidenceIEA
GenePsma7Authority29674Mapping file idENSRNOG00000056853 Ensembl fileEvidenceIEA
GenePsmb1Authority94198Mapping file id94198 NCBI fileEvidenceIEA
GenePsmb2Authority29675Mapping file id29675 NCBI fileEvidenceIEA
GenePsmb3Authority29676Mapping file id29676 NCBI fileEvidenceIEA
GenePsmb5Authority29425Mapping file id29425 NCBI fileEvidenceIEA
GenePsmb6Authority29666Mapping file id29666 NCBI fileEvidenceIEA
GenePsmb6l1Authority100360846Mapping file id100360846 NCBI fileEvidenceIEA
GenePsmb7Authority85492Mapping file id85492 NCBI fileEvidenceIEA
GenePsmc1Authority117263Mapping file id117263 NCBI fileEvidenceIEA
GenePsmc2Authority25581Mapping file id25581 NCBI fileEvidenceIEA
GenePsmc3Authority29677Mapping file id29677 NCBI fileEvidenceIEA
GenePsmc4Authority117262Mapping file id117262 NCBI fileEvidenceIEA
GenePsmc5Authority81827Mapping file id81827 NCBI fileEvidenceIEA
GenePsmd1Authority83806Mapping file id83806 NCBI fileEvidenceIEA
GenePsmd11Authority303353Mapping file id303353 NCBI fileEvidenceIEA
GenePsmd12Authority287772Mapping file id287772 NCBI fileEvidenceIEA
GenePsmd13Authority365388Mapping file id365388 NCBI fileEvidenceIEA
GenePsmd14Authority311078Mapping file id311078 NCBI fileEvidenceIEA
GenePsmd2Authority287984Mapping file id287984 NCBI fileEvidenceIEA
GenePsmd3Authority287670Mapping file idENSRNOG00000028103 Ensembl fileEvidenceIEA
GenePsmd6Authority289924Mapping file idENSRNOG00000006751 Ensembl fileEvidenceIEA
GenePsmd7Authority307821Mapping file idENSRNOG00000014097 Ensembl fileEvidenceIEA
GenePsmd8Authority292766Mapping file id292766 NCBI fileEvidenceIEA
GenePtenAuthority50557Mapping file id50557 NCBI fileEvidenceIEA
GenePtpn11Authority25622Mapping file id25622 NCBI fileEvidenceIEA
GeneRac1Authority363875Mapping file id363875 NCBI fileEvidenceIEA
GeneRac2Authority366957Mapping file idENSRNOG00000007350 Ensembl fileEvidenceIEA
GeneRbbp4Authority313048Mapping file id313048 NCBI fileEvidenceIEA
GeneRbbp4l1Authority310511Mapping file idENSRNOG00000028052 Ensembl fileEvidenceIEA
GeneRbbp7Authority83712Mapping file id83712 NCBI fileEvidenceIEA
GeneRhebAuthority26954Mapping file id26954 NCBI fileEvidenceIEA
GeneRhogAuthority308875Mapping file id308875 NCBI fileEvidenceIEA
GeneRictorAuthority310131Mapping file id310131 NCBI fileEvidenceIEA
GeneRing1Authority309626Mapping file id309626 NCBI fileEvidenceIEA
GeneRnf146Authority308051Mapping file id308051 NCBI fileEvidenceIEA
GeneRnf2Authority304850Mapping file idENSRNOG00000002454 Ensembl fileEvidenceIEA
GeneRps27aAuthority100912032Mapping file id100912032 NCBI fileEvidenceIEA

Evidence codes on this page: IEA, as the mapping file writes them; a row carrying two was written twice by the file, once under each. The mapping file id says which file placed the gene: an NCBI Gene id from NCBI2Reactome_All_Levels.txt, an Ensembl gene id from Ensembl2Reactome_All_Levels.txt. The two files can disagree about a code, so a row's codes are the one file's view. Measured by this site's build over this release on 2026-09-09: the two files disagree on none of the 64,140 rat pairs both place.

  • Reactome mapping files, the rat rows for this pathway · Reactome release 97 · read · Reactome downloads"NCBI2Reactome_All_Levels.txt" and "Ensembl2Reactome_All_Levels.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.

03The hierarchy

Parents and children in this release's hierarchy

Reactome's hierarchy is a graph rather than a tree: a pathway can sit under more than one parent, and the gene counts are each pathway's own placements at every level under it, so a parent's count is not the sum of its children's.

  • Reactome, the rat pathway list and hierarchy relationship file · Reactome release 97 · read · Reactome downloads"ReactomePathways.txt" and "ReactomePathwaysRelation.txt", Reactome, release 97, https://reactome.org/download-data/ (date of access 2026-09-09). Data CC0; attribution encouraged.